Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2808976..2809247 | Replicon | chromosome |
| Accession | NZ_CP031231 | ||
| Organism | Escherichia coli strain Es_ST410_NW1_NDM_09_2017 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2809014..2809117 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2808976..2809247 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DVH14_RS13680 | 2806135..2807556 | + | 1422 | Protein_2628 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| DVH14_RS13685 | 2807690..2807926 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| DVH14_RS13690 | 2808031..2808222 | + | 192 | WP_001296140.1 | YebW family protein | - |
| DVH14_RS13695 | 2808223..2808879 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2808976..2809247 | + | 272 | - | - | Antitoxin |
| - | 2809014..2809117 | - | 104 | - | - | Toxin |
| DVH14_RS13700 | 2809275..2809616 | - | 342 | WP_000976492.1 | YebY family protein | - |
| DVH14_RS13705 | 2809629..2810501 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| DVH14_RS13710 | 2810505..2810879 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| DVH14_RS13715 | 2811018..2811248 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| DVH14_RS13720 | 2811350..2812006 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| DVH14_RS13725 | 2812030..2812692 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T108647 NZ_CP031231:c2809117-2809014 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT108647 NZ_CP031231:2808976-2809247 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
