108167

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) yefM-yoeB (relBE)/YoeB-YefM
Location 2676287..2676789 Replicon chromosome
Accession NZ_CP030913
Organism Pseudomonas aeruginosa strain Y89

Toxin (Protein)


Gene name yoeB Uniprot ID A0A1C7CBF7
Locus tag Y89_RS12975 Protein ID WP_023081358.1
Coordinates 2676535..2676789 (+) Length 85 a.a.

Antitoxin (Protein)


Gene name yefM Uniprot ID A0A1C7C600
Locus tag Y89_RS12970 Protein ID WP_004350479.1
Coordinates 2676287..2676538 (+) Length 84 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
Y89_RS12945 2671399..2672043 + 645 WP_003090351.1 UvrY/SirA/GacA family response regulator transcription factor -
Y89_RS12950 2672044..2673870 + 1827 WP_003097551.1 excinuclease ABC subunit UvrC -
Y89_RS12955 2673904..2674464 + 561 WP_003090349.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
Y89_RS12965 2674832..2676202 + 1371 WP_023081359.1 tyrosine-type recombinase/integrase -
Y89_RS12970 2676287..2676538 + 252 WP_004350479.1 YoeB-YefM toxin-antitoxin system antitoxin YefM Antitoxin
Y89_RS12975 2676535..2676789 + 255 WP_023081358.1 Txe/YoeB family addiction module toxin Toxin
Y89_RS12980 2677015..2677410 + 396 WP_023081357.1 DUF3742 family protein -
Y89_RS12985 2677418..2678938 - 1521 WP_004350477.1 conjugal transfer protein TraG N-terminal domain-containing protein -
Y89_RS12990 2678953..2679303 - 351 WP_023081356.1 hypothetical protein -
Y89_RS12995 2679491..2680354 - 864 WP_004350470.1 integrase domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(5-84)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-74)


Sequences

Toxin        


Download         Length: 85 a.a.        Molecular weight: 10061.50 Da        Isoelectric Point: 8.4789

>T108167 WP_023081358.1 NZ_CP030913:2676535-2676789 [Pseudomonas aeruginosa]
VKLIWSEQAWDDYLYWQDTDKRMVKKVNELIKDACRTPFEGKGKPEPLRHNLAGFWSRRITAEHRFVYSVTDDALLIAAC
RYHY

Download         Length: 255 bp

>T108167 NZ_CP030913:2676535-2676789 [Pseudomonas aeruginosa]
GTGAAGCTGATCTGGTCGGAACAAGCCTGGGACGATTATCTGTACTGGCAGGACACGGATAAGCGTATGGTGAAAAAGGT
CAACGAGTTGATCAAGGATGCCTGCCGTACCCCGTTCGAGGGCAAGGGCAAGCCGGAGCCGCTTCGCCACAACCTGGCGG
GCTTCTGGTCGAGACGGATCACGGCCGAGCATCGGTTTGTGTATTCGGTGACGGATGACGCGCTGCTGATTGCAGCCTGC
CGTTACCACTATTGA

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9363.65 Da        Isoelectric Point: 4.5843

>AT108167 WP_004350479.1 NZ_CP030913:2676287-2676538 [Pseudomonas aeruginosa]
MRTISYTEARQNLSATMMKTVEDRAPILITRQNGEACVLMSLEEFNALEETAYLLRSPANARRLMDSIDSLKQGQGVERD
LAE

Download         Length: 252 bp

>AT108167 NZ_CP030913:2676287-2676538 [Pseudomonas aeruginosa]
ATGCGCACGATCAGTTACACCGAAGCCCGGCAGAACCTGTCGGCCACCATGATGAAGACCGTGGAGGATCGCGCCCCGAT
CCTGATTACCCGGCAGAACGGCGAAGCCTGCGTGTTGATGTCCCTGGAAGAGTTCAACGCGCTGGAGGAAACGGCTTATC
TGCTGCGCTCCCCGGCCAATGCCCGCCGCCTGATGGATTCGATTGACAGCCTCAAGCAAGGCCAGGGCGTCGAGCGGGAT
TTGGCCGAGTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A1C7CBF7

Antitoxin

Source ID Structure
AlphaFold DB A0A1C7C600

References