Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 231360..231592 | Replicon | chromosome |
| Accession | NZ_CP030778 | ||
| Organism | Escherichia albertii strain 05-3106 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 231488..231590 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 231360..231592 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CYM74_RS01180 | 228290..228952 | - | 663 | WP_000944295.1 | exodeoxyribonuclease X | - |
| CYM74_RS01185 | 228976..229188 | - | 213 | Protein_228 | carbon-nitrogen hydrolase family protein | - |
| CYM74_RS01190 | 229354..229584 | - | 231 | WP_000916758.1 | DNA polymerase III subunit theta | - |
| CYM74_RS01195 | 229723..230100 | + | 378 | WP_000741562.1 | CopC domain-containing protein YobA | - |
| CYM74_RS01200 | 230104..230976 | + | 873 | WP_044708630.1 | copper homeostasis membrane protein CopD | - |
| CYM74_RS01205 | 230989..231330 | + | 342 | WP_000976487.1 | YebY family protein | - |
| - | 231360..231592 | - | 233 | - | - | Antitoxin |
| - | 231488..231590 | + | 103 | - | - | Toxin |
| CYM74_RS01210 | 232202..232780 | + | 579 | WP_164511683.1 | bfpT-regulated chaperone | - |
| CYM74_RS24120 | 233237..233401 | + | 165 | WP_157944741.1 | hypothetical protein | - |
| CYM74_RS01215 | 233976..234296 | + | 321 | WP_044712911.1 | hypothetical protein | - |
| CYM74_RS01220 | 234369..235826 | + | 1458 | WP_059227268.1 | Trk system potassium transporter TrkG | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T107937 NZ_CP030778:231488-231590 [Escherichia albertii]
GCAAGGCAACTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAACA
GGAATCGTTTTCGGTCTCTTTTT
GCAAGGCAACTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAACA
GGAATCGTTTTCGGTCTCTTTTT
Antitoxin
Download Length: 233 bp
>AT107937 NZ_CP030778:c231592-231360 [Escherichia albertii]
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTCAGTTGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTCAGTTGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
