Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2109379..2109582 | Replicon | chromosome |
| Accession | NZ_CP030007 | ||
| Organism | Enterobacter hormaechei subsp. xiangfangensis strain Pb204 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2109472..2109575 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2109379..2109582 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DN066_RS10300 | 2105916..2106578 | - | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
| DN066_RS10305 | 2106603..2107253 | - | 651 | WP_015570289.1 | carbon-nitrogen hydrolase family protein | - |
| DN066_RS10310 | 2107365..2107595 | - | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| DN066_RS10315 | 2107733..2108104 | + | 372 | WP_032648690.1 | CopC domain-containing protein YobA | - |
| DN066_RS10320 | 2108106..2108975 | + | 870 | WP_017693249.1 | copper homeostasis membrane protein CopD | - |
| DN066_RS10325 | 2108992..2109330 | + | 339 | WP_003859787.1 | YebY family protein | - |
| - | 2109379..2109582 | - | 204 | - | - | Antitoxin |
| - | 2109472..2109575 | + | 104 | - | - | Toxin |
| DN066_RS10330 | 2109653..2110738 | - | 1086 | WP_023300431.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| DN066_RS10335 | 2110707..2110979 | - | 273 | WP_023300430.1 | hypothetical protein | - |
| DN066_RS10340 | 2111139..2111891 | - | 753 | WP_032648687.1 | methyltransferase | - |
| DN066_RS10345 | 2111941..2112180 | - | 240 | Protein_1949 | DUF4222 domain-containing protein | - |
| DN066_RS10350 | 2112180..2112395 | - | 216 | WP_032648685.1 | TraR/DksA family transcriptional regulator | - |
| DN066_RS10355 | 2112487..2112687 | - | 201 | WP_032647498.1 | hypothetical protein | - |
| DN066_RS10360 | 2112684..2112956 | - | 273 | WP_080337312.1 | DUF5405 family protein | - |
| DN066_RS10365 | 2112953..2113171 | - | 219 | WP_006176198.1 | hypothetical protein | - |
| DN066_RS10370 | 2113168..2113719 | - | 552 | WP_032647502.1 | phage N-6-adenine-methyltransferase | - |
| DN066_RS24595 | 2113716..2113883 | - | 168 | WP_162875207.1 | hypothetical protein | - |
| DN066_RS10375 | 2113935..2114039 | - | 105 | Protein_1956 | regulator | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | gtrB / gtrA | 2042679..2171843 | 129164 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T106842 NZ_CP030007:2109472-2109575 [Enterobacter hormaechei subsp. xiangfangensis]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 204 bp
>AT106842 NZ_CP030007:c2109582-2109379 [Enterobacter hormaechei subsp. xiangfangensis]
AATAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTG
GTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
AATAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTG
GTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
