Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/ParE-DnaT |
| Location | 25623..26145 | Replicon | plasmid pK43 |
| Accession | NZ_CP029854 | ||
| Organism | Salmonella enterica subsp. enterica serovar Typhi strain 343077_281186 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | G3CAN5 |
| Locus tag | SM281186_RS24975 | Protein ID | WP_000220560.1 |
| Coordinates | 25623..25904 (-) | Length | 94 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | G3CAG1 |
| Locus tag | SM281186_RS24980 | Protein ID | WP_000121743.1 |
| Coordinates | 25894..26145 (-) | Length | 84 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SM281186_RS24935 | 21468..22634 | - | 1167 | WP_000539539.1 | relaxase/mobilization nuclease domain-containing protein | - |
| SM281186_RS24940 | 22637..23182 | - | 546 | WP_046597963.1 | hypothetical protein | - |
| SM281186_RS25340 | 23177..23251 | - | 75 | Protein_25 | DNA distortion polypeptide 3 | - |
| SM281186_RS24945 | 23508..23780 | - | 273 | WP_000160399.1 | hypothetical protein | - |
| SM281186_RS25230 | 23793..23942 | - | 150 | WP_000003880.1 | hypothetical protein | - |
| SM281186_RS24950 | 24012..24191 | - | 180 | WP_000439078.1 | hypothetical protein | - |
| SM281186_RS24955 | 24234..24563 | - | 330 | WP_046597962.1 | hypothetical protein | - |
| SM281186_RS24960 | 24656..24871 | - | 216 | WP_001180117.1 | hypothetical protein | - |
| SM281186_RS24965 | 24861..25106 | - | 246 | WP_000356542.1 | hypothetical protein | - |
| SM281186_RS24970 | 25154..25477 | - | 324 | WP_001181903.1 | hypothetical protein | - |
| SM281186_RS24975 | 25623..25904 | - | 282 | WP_000220560.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| SM281186_RS24980 | 25894..26145 | - | 252 | WP_000121743.1 | plasmid stabilization protein | Antitoxin |
| SM281186_RS24990 | 27207..28061 | + | 855 | WP_001239324.1 | replication initiation protein | - |
| SM281186_RS24995 | 28086..28532 | + | 447 | WP_025840294.1 | hypothetical protein | - |
| SM281186_RS25000 | 28600..29025 | + | 426 | WP_001423344.1 | hypothetical protein | - |
| SM281186_RS25345 | 29077..29310 | - | 234 | WP_121526436.1 | YcxB family protein | - |
| SM281186_RS25350 | 29488..29673 | - | 186 | Protein_39 | YcxB family protein | - |
| SM281186_RS25355 | 30108..30419 | - | 312 | WP_001423339.1 | hypothetical protein | - |
| SM281186_RS25025 | 30435..30665 | - | 231 | WP_000051063.1 | partitioning protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Non-Mobilizable plasmid | - | - | 1..43427 | 43427 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 94 a.a. Molecular weight: 13852.62 Da Isoelectric Point: 5.5500
>T106749 WP_000220560.1 NZ_CP029854:c25904-25623 [Salmonella enterica subsp. enterica serovar Typhi]
FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
FFFFFFFFFFFFFF
FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
FFFFFFFFFFFFFF
Download Length: 282 bp
>T106749 NZ_CP029854:c25904-25623 [Salmonella enterica subsp. enterica serovar Typhi]
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
Antitoxin
Download Length: 84 a.a. Molecular weight: 12380.85 Da Isoelectric Point: 5.5500
>AT106749 WP_000121743.1 NZ_CP029854:c26145-25894 [Salmonella enterica subsp. enterica serovar Typhi]
FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
FFFF
FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
FFFF
Download Length: 252 bp
>AT106749 NZ_CP029854:c26145-25894 [Salmonella enterica subsp. enterica serovar Typhi]
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTT
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | G3CAN5 |
Antitoxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A3S5I301 |