Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3898571..3898716 | Replicon | chromosome |
| Accession | NZ_CP029587 | ||
| Organism | Klebsiella pneumoniae strain DA33141 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3898607..3898709 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3898571..3898716 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DLJ66_RS19455 | 3893701..3895761 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| DLJ66_RS19460 | 3895765..3896424 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| DLJ66_RS19465 | 3896503..3896733 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| DLJ66_RS19470 | 3896846..3897220 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| DLJ66_RS19475 | 3897224..3898093 | + | 870 | WP_009307538.1 | copper homeostasis membrane protein CopD | - |
| DLJ66_RS19480 | 3898110..3898448 | + | 339 | WP_009307539.1 | YebY family protein | - |
| - | 3898571..3898716 | - | 146 | - | - | Antitoxin |
| - | 3898607..3898709 | + | 103 | - | - | Toxin |
| DLJ66_RS28640 | 3899085..3899228 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| DLJ66_RS19490 | 3899333..3900301 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| DLJ66_RS19495 | 3900458..3901111 | + | 654 | WP_009307541.1 | protein-serine/threonine phosphatase | - |
| DLJ66_RS19500 | 3901108..3901299 | - | 192 | WP_002911395.1 | YebW family protein | - |
| DLJ66_RS19505 | 3901397..3901636 | - | 240 | WP_002911393.1 | YebV family protein | - |
| DLJ66_RS19510 | 3901752..3903185 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T105939 NZ_CP029587:3898607-3898709 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT105939 NZ_CP029587:c3898716-3898571 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
