Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3639002..3639273 | Replicon | chromosome |
| Accession | NZ_CP029574 | ||
| Organism | Escherichia coli strain DA33133 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3639040..3639143 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3639002..3639273 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DLJ62_RS18760 | 3636159..3637598 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| DLJ62_RS18765 | 3637716..3637952 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| DLJ62_RS18770 | 3638057..3638248 | + | 192 | WP_000457842.1 | YebW family protein | - |
| DLJ62_RS18775 | 3638249..3638905 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 3639002..3639273 | + | 272 | - | - | Antitoxin |
| - | 3639040..3639143 | - | 104 | - | - | Toxin |
| DLJ62_RS18780 | 3639301..3639642 | - | 342 | WP_000976476.1 | YebY family protein | - |
| DLJ62_RS18785 | 3639655..3640527 | - | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| DLJ62_RS18790 | 3640531..3640905 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| DLJ62_RS18795 | 3641044..3641274 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| DLJ62_RS18800 | 3641376..3642032 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| DLJ62_RS18805 | 3642056..3642718 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T105807 NZ_CP029574:c3639143-3639040 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT105807 NZ_CP029574:3639002-3639273 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
