Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 203904..204175 | Replicon | chromosome |
| Accession | NZ_CP029111 | ||
| Organism | Escherichia coli strain AR436 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 204034..204137 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 203904..204175 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CSC23_RS01695 | 200459..201121 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| CSC23_RS01700 | 201145..201801 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| CSC23_RS01705 | 201903..202133 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| CSC23_RS01710 | 202272..202646 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| CSC23_RS01715 | 202650..203522 | + | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| CSC23_RS01720 | 203535..203876 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 203904..204175 | - | 272 | - | - | Antitoxin |
| - | 204034..204137 | + | 104 | - | - | Toxin |
| CSC23_RS01725 | 204272..204928 | + | 657 | WP_000812735.1 | protein-serine/threonine phosphatase | - |
| CSC23_RS01730 | 204929..205120 | - | 192 | WP_001296140.1 | YebW family protein | - |
| CSC23_RS01735 | 205225..205461 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| CSC23_RS01740 | 205579..207018 | - | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T104906 NZ_CP029111:204034-204137 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT104906 NZ_CP029111:c204175-203904 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
