Detailed information of TA system TA104847

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): PumAB/COG3657-dnstrm_HI1420
• Location: 1539216..1539802
• Replicon: chromosome
• Accession: NZ_CP029097
• Organism: Pseudomonas aeruginosa strain AR439

Toxin (Protein)

• Gene name: PumA
• Uniprot ID: G8CP73
• Locus tag: CSC26_RS09730
• Protein ID: WP_003120987.1
• Coordinates: 1539216..1539515 (+)
• Length: 100 a.a.

Antitoxin (Protein)

• Gene name: PumB
• Uniprot ID: -
• Locus tag: CSC26_RS09735
• Protein ID: WP_003448662.1
• Coordinates: 1539512..1539802 (+)
• Length: 97 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
CSC26_RS09710	1534329..1534862	-	534	WP_003099760.1	type IV pilus biogenesis protein PilP	-
CSC26_RS09715	1534852..1536177	-	1326	WP_003099758.1	type 4b pilus protein PilO2	-
CSC26_RS09720	1536181..1537890	-	1710	WP_012076860.1	PilN family type IVB pilus formation outer membrane protein	-
CSC26_RS09725	1537890..1539014	-	1125	WP_012076859.1	TcpQ domain-containing protein	-
CSC26_RS09730	1539216..1539515	+	300	WP_003120987.1	type II toxin-antitoxin system RelE/ParE family toxin	Toxin
CSC26_RS09735	1539512..1539802	+	291	WP_003448662.1	putative addiction module antidote protein	Antitoxin
CSC26_RS09740	1539873..1540217	-	345	WP_016851612.1	hypothetical protein	-
CSC26_RS09745	1540358..1542334	-	1977	WP_016851611.1	DEAD/DEAH box helicase	-
CSC26_RS09750	1542331..1544220	-	1890	WP_016851610.1	hypothetical protein	-
CSC26_RS09755	1544442..1544651	-	210	WP_003105733.1	cold-shock protein	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)
	-	inside	Integrative and Conjugative Element	-	-	1479588..1567435	87847

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Addiction module killer protein, predicted (3-96)

Antitoxin

• Cro/C1-type helix-turn-helix domain (47-90)

Sequences

Toxin

Protein

• Length: 100 a.a.
• Molecular weight: 11133.88 Da
• Isoelectric Point: 10.4495

>T104847 WP_003120987.1 NZ_CP029097:1539216-1539515 [Pseudomonas aeruginosa]
MVEVKQTATFMAWESKLKDRRAKAVIAARIFRLANGLPGDVSPVGQGVSELRIHYGPGYRVYFQQRGTEIVILLCGGDKS
SQARDIEMAKRLANEWRPQ

Nucleotide

• Length: 300 bp

>T104847 NZ_CP029097:1539216-1539515 [Pseudomonas aeruginosa]
ATGGTCGAAGTCAAACAAACCGCCACTTTCATGGCATGGGAAAGCAAGCTAAAGGATCGGCGGGCAAAGGCCGTGATCGC
CGCCCGTATCTTCCGATTGGCGAATGGACTACCCGGCGATGTGTCACCAGTCGGCCAGGGTGTGAGCGAGTTGAGGATTC
ACTATGGCCCAGGCTATCGGGTGTACTTCCAGCAGCGCGGGACGGAAATCGTCATCCTGCTATGTGGTGGAGACAAGAGC
AGCCAGGCCAGGGATATAGAAATGGCGAAACGCCTGGCAAATGAGTGGAGGCCGCAATGA

Antitoxin

Protein

• Length: 97 a.a.
• Molecular weight: 10394.91 Da
• Isoelectric Point: 4.7527

>AT104847 WP_003448662.1 NZ_CP029097:1539512-1539802 [Pseudomonas aeruginosa]
MTEQIYDYDPAQALDSPEAMALFIADALDTGDTAYIAKAMGVVARAKGMTELAKETGLAREQLYKSFSERGNPTLKTMLA
VMRALGVDLTARPHAQ

Nucleotide

• Length: 291 bp

>AT104847 NZ_CP029097:1539512-1539802 [Pseudomonas aeruginosa]
ATGACCGAGCAAATTTATGATTATGACCCCGCGCAAGCGCTGGACAGCCCGGAGGCCATGGCTCTGTTCATCGCAGACGC
TTTGGATACTGGAGACACCGCCTATATCGCTAAGGCTATGGGAGTCGTGGCCCGCGCCAAGGGGATGACGGAGTTGGCCA
AGGAAACGGGTTTGGCCAGGGAGCAGCTTTACAAATCGTTTAGTGAGCGCGGGAACCCTACATTGAAAACCATGCTGGCA
GTAATGCGAGCTCTGGGAGTTGATCTGACCGCCCGCCCGCATGCTCAGTGA

Structures

Toxin

• AlphaFold DB: G8CP73