Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2669049..2669317 | Replicon | chromosome |
| Accession | NZ_CP028771 | ||
| Organism | Escherichia coli strain A3 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2669087..2669189 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2669049..2669317 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AOY54_RS13075 | 2666206..2667645 | + | 1440 | WP_024190479.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| AOY54_RS13080 | 2667763..2667999 | + | 237 | WP_001295499.1 | YebV family protein | - |
| AOY54_RS13085 | 2668104..2668295 | + | 192 | WP_001317886.1 | YebW family protein | - |
| AOY54_RS13090 | 2668296..2668952 | - | 657 | WP_001357783.1 | protein-serine/threonine phosphatase | - |
| - | 2669049..2669317 | + | 269 | - | - | Antitoxin |
| - | 2669087..2669189 | - | 103 | - | - | Toxin |
| AOY54_RS13095 | 2669347..2669688 | - | 342 | WP_000976472.1 | YebY family protein | - |
| AOY54_RS13100 | 2669701..2670573 | - | 873 | WP_000879311.1 | copper homeostasis membrane protein CopD | - |
| AOY54_RS13105 | 2670577..2670951 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| AOY54_RS13110 | 2671090..2671320 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| AOY54_RS13115 | 2671422..2672078 | + | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein YobB | - |
| AOY54_RS13120 | 2672101..2672763 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T104071 NZ_CP028771:c2669189-2669087 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT104071 NZ_CP028771:2669049-2669317 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
