Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2705438..2705709 | Replicon | chromosome |
| Accession | NZ_CP028759 | ||
| Organism | Escherichia coli strain A15 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2705476..2705579 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2705438..2705709 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AOY68_RS12910 | 2702595..2704034 | + | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| AOY68_RS12915 | 2704152..2704388 | + | 237 | WP_001295499.1 | YebV family protein | - |
| AOY68_RS12920 | 2704493..2704684 | + | 192 | WP_001296140.1 | YebW family protein | - |
| AOY68_RS12925 | 2704685..2705341 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2705438..2705709 | + | 272 | - | - | Antitoxin |
| - | 2705476..2705579 | - | 104 | - | - | Toxin |
| AOY68_RS12930 | 2705737..2706078 | - | 342 | WP_000976492.1 | YebY family protein | - |
| AOY68_RS12935 | 2706091..2706963 | - | 873 | WP_000879285.1 | copper homeostasis membrane protein CopD | - |
| AOY68_RS12940 | 2706967..2707341 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| AOY68_RS12945 | 2707480..2707710 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| AOY68_RS12950 | 2707812..2708468 | + | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein YobB | - |
| AOY68_RS12955 | 2708492..2709154 | + | 663 | WP_201489226.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T103764 NZ_CP028759:c2705579-2705476 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT103764 NZ_CP028759:2705438-2705709 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
