Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2781782..2782053 | Replicon | chromosome |
| Accession | NZ_CP028758 | ||
| Organism | Escherichia coli strain A16 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2781820..2781923 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2781782..2782053 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AOY69_RS13040 | 2778939..2780378 | + | 1440 | WP_086217373.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| AOY69_RS13045 | 2780496..2780732 | + | 237 | WP_001295499.1 | YebV family protein | - |
| AOY69_RS13050 | 2780837..2781028 | + | 192 | WP_001296140.1 | YebW family protein | - |
| AOY69_RS13055 | 2781029..2781685 | - | 657 | WP_000812736.1 | protein-serine/threonine phosphatase | - |
| - | 2781782..2782053 | + | 272 | - | - | Antitoxin |
| - | 2781820..2781923 | - | 104 | - | - | Toxin |
| AOY69_RS13060 | 2782081..2782422 | - | 342 | WP_000976472.1 | YebY family protein | - |
| AOY69_RS13065 | 2782435..2783307 | - | 873 | WP_001549302.1 | copper homeostasis membrane protein CopD | - |
| AOY69_RS13070 | 2783311..2783685 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| AOY69_RS13075 | 2783824..2784054 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| AOY69_RS13080 | 2784156..2784812 | + | 657 | WP_000011655.1 | carbon-nitrogen hydrolase family protein YobB | - |
| AOY69_RS13085 | 2784836..2785498 | + | 663 | WP_201479691.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T103746 NZ_CP028758:c2781923-2781820 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT103746 NZ_CP028758:2781782-2782053 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
