Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2790986..2791257 | Replicon | chromosome |
| Accession | NZ_CP028757 | ||
| Organism | Escherichia coli strain A17 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2791024..2791127 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2790986..2791257 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AOY70_RS13460 | 2788143..2789582 | + | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| AOY70_RS13465 | 2789700..2789936 | + | 237 | WP_001295499.1 | YebV family protein | - |
| AOY70_RS13470 | 2790041..2790232 | + | 192 | WP_001296140.1 | YebW family protein | - |
| AOY70_RS13475 | 2790233..2790889 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2790986..2791257 | + | 272 | - | - | Antitoxin |
| - | 2791024..2791127 | - | 104 | - | - | Toxin |
| AOY70_RS13480 | 2791285..2791626 | - | 342 | WP_000976492.1 | YebY family protein | - |
| AOY70_RS13485 | 2791639..2792511 | - | 873 | WP_000879285.1 | copper homeostasis membrane protein CopD | - |
| AOY70_RS13490 | 2792515..2792889 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| AOY70_RS13495 | 2793028..2793258 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| AOY70_RS13500 | 2793360..2794016 | + | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein YobB | - |
| AOY70_RS13505 | 2794040..2794702 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T103718 NZ_CP028757:c2791127-2791024 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT103718 NZ_CP028757:2790986-2791257 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
