Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2006551..2006822 | Replicon | chromosome |
| Accession | NZ_CP028746 | ||
| Organism | Escherichia coli strain A29 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2006681..2006784 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2006551..2006822 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AOY82_RS09635 | 2003106..2003768 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| AOY82_RS09640 | 2003792..2004448 | - | 657 | WP_000011660.1 | carbon-nitrogen hydrolase family protein YobB | - |
| AOY82_RS09645 | 2004550..2004780 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| AOY82_RS09650 | 2004919..2005293 | + | 375 | WP_000255065.1 | CopC domain-containing protein YobA | - |
| AOY82_RS09655 | 2005297..2006169 | + | 873 | WP_000879298.1 | copper homeostasis membrane protein CopD | - |
| AOY82_RS09660 | 2006182..2006523 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2006551..2006822 | - | 272 | - | - | Antitoxin |
| - | 2006681..2006784 | + | 104 | - | - | Toxin |
| AOY82_RS09665 | 2006919..2007575 | + | 657 | WP_000812733.1 | protein-serine/threonine phosphatase | - |
| AOY82_RS09670 | 2007576..2007767 | - | 192 | WP_001338167.1 | YebW family protein | - |
| AOY82_RS09675 | 2007872..2008108 | - | 237 | WP_001338166.1 | YebV family protein | - |
| AOY82_RS09680 | 2008226..2009665 | - | 1440 | WP_053275028.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T103446 NZ_CP028746:2006681-2006784 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT103446 NZ_CP028746:c2006822-2006551 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
