Detailed information of TA system
Overview
TA module
| Type | IV | Classification (family/domain) | yeeUV (cbtA-cbeA)/CbtA-CbeA |
| Location | 470866..471701 | Replicon | chromosome |
| Accession | NZ_CP028744 | ||
| Organism | Escherichia coli strain A31 | ||
Toxin (Protein)
| Gene name | yeeV | Uniprot ID | - |
| Locus tag | AOY84_RS02105 | Protein ID | WP_240754952.1 |
| Coordinates | 470866..471243 (-) | Length | 126 a.a. |
Antitoxin (Protein)
| Gene name | yeeU | Uniprot ID | - |
| Locus tag | AOY84_RS02110 | Protein ID | WP_240754953.1 |
| Coordinates | 471333..471701 (-) | Length | 123 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AOY84_RS02075 (466142) | 466142..467680 | - | 1539 | WP_001187182.1 | lysine decarboxylation/transport transcriptional activator CadC | - |
| AOY84_RS02080 (468563) | 468563..468889 | - | 327 | WP_000779482.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| AOY84_RS02085 (468886) | 468886..469149 | - | 264 | WP_001143297.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| AOY84_RS02090 (469221) | 469221..470087 | - | 867 | WP_240754951.1 | DUF4942 domain-containing protein | - |
| AOY84_RS02095 (470172) | 470172..470369 | - | 198 | WP_021531598.1 | DUF957 domain-containing protein | - |
| AOY84_RS02100 (470381) | 470381..470869 | - | 489 | WP_000761678.1 | DUF5983 family protein | - |
| AOY84_RS02105 (470866) | 470866..471243 | - | 378 | WP_240754952.1 | type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA | Toxin |
| AOY84_RS02110 (471333) | 471333..471701 | - | 369 | WP_240754953.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin |
| AOY84_RS02115 (471751) | 471751..472395 | - | 645 | WP_240754954.1 | antitoxin of toxin-antitoxin stability system | - |
| AOY84_RS02120 (472414) | 472414..472635 | - | 222 | WP_000692315.1 | DUF987 domain-containing protein | - |
| AOY84_RS02125 (472698) | 472698..473174 | - | 477 | WP_240754955.1 | RadC family protein | - |
| AOY84_RS02130 (473190) | 473190..473675 | - | 486 | WP_240754956.1 | antirestriction protein | - |
| AOY84_RS02135 (473752) | 473752..474570 | - | 819 | WP_240754957.1 | DUF932 domain-containing protein | - |
| AOY84_RS02140 (474660) | 474660..474893 | - | 234 | WP_097456906.1 | DUF905 family protein | - |
| AOY84_RS02145 (474899) | 474899..475576 | - | 678 | WP_240754958.1 | hypothetical protein | - |
| AOY84_RS02150 (475696) | 475696..476580 | - | 885 | WP_240754959.1 | YfjP family GTPase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Genomic island | - | faeC / faeD / faeE / faeF / faeG / faeH / faeI / faeJ | 435244..512162 | 76918 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 126 a.a. Molecular weight: 13907.92 Da Isoelectric Point: 7.7785
>T103378 WP_240754952.1 NZ_CP028744:c471243-470866 [Escherichia coli]
MKTLPVLPGQSASSRPSPVEIWQTLLTRLLDQHYGLTLNDTPFADERVIEQHIEAGISLCDALNFLVEKYALVRTDQPGF
SACTCSQLINSIDILRARRATGLMTRDNYRTVNNITLGKHPGAKQ
MKTLPVLPGQSASSRPSPVEIWQTLLTRLLDQHYGLTLNDTPFADERVIEQHIEAGISLCDALNFLVEKYALVRTDQPGF
SACTCSQLINSIDILRARRATGLMTRDNYRTVNNITLGKHPGAKQ
Download Length: 378 bp
>T103378 NZ_CP028744:c471243-470866 [Escherichia coli]
ATGAAAACATTACCTGTATTACCCGGGCAGTCGGCCAGCTCACGCCCGTCTCCGGTTGAAATCTGGCAGACACTGCTCAC
CCGACTGCTGGACCAGCACTACGGCCTCACACTGAATGACACACCGTTCGCTGATGAACGTGTGATTGAGCAGCATATTG
AGGCCGGCATTTCACTGTGCGATGCACTGAACTTTCTCGTTGAAAAATACGCCCTGGTACGTACCGACCAGCCGGGATTC
AGCGCCTGTACCTGCTCTCAGTTAATCAACAGTATCGATATCCTCCGGGCACGCCGGGCAACCGGCCTGATGACACGCGA
CAACTACAGAACGGTAAATAACATTACCCTGGGTAAACATCCGGGGGCGAAACAATGA
ATGAAAACATTACCTGTATTACCCGGGCAGTCGGCCAGCTCACGCCCGTCTCCGGTTGAAATCTGGCAGACACTGCTCAC
CCGACTGCTGGACCAGCACTACGGCCTCACACTGAATGACACACCGTTCGCTGATGAACGTGTGATTGAGCAGCATATTG
AGGCCGGCATTTCACTGTGCGATGCACTGAACTTTCTCGTTGAAAAATACGCCCTGGTACGTACCGACCAGCCGGGATTC
AGCGCCTGTACCTGCTCTCAGTTAATCAACAGTATCGATATCCTCCGGGCACGCCGGGCAACCGGCCTGATGACACGCGA
CAACTACAGAACGGTAAATAACATTACCCTGGGTAAACATCCGGGGGCGAAACAATGA
Antitoxin
Download Length: 123 a.a. Molecular weight: 13534.26 Da Isoelectric Point: 5.4766
>AT103378 WP_240754953.1 NZ_CP028744:c471701-471333 [Escherichia coli]
VSDTLSGTTHPDDNHDRPWWGLPCTVTPCFGARLVQEGNRLHYLADRAGIRGQFSDADACHLDQAFPLLMKQLELMLTSG
ELSPRYQHTVTLYAKGLTCEADTLGSCGYVYMAVYPTPETKQ
VSDTLSGTTHPDDNHDRPWWGLPCTVTPCFGARLVQEGNRLHYLADRAGIRGQFSDADACHLDQAFPLLMKQLELMLTSG
ELSPRYQHTVTLYAKGLTCEADTLGSCGYVYMAVYPTPETKQ
Download Length: 369 bp
>AT103378 NZ_CP028744:c471701-471333 [Escherichia coli]
GTGTCAGACACACTCTCCGGGACAACGCATCCCGATGACAATCACGACCGTCCCTGGTGGGGGCTACCCTGCACCGTGAC
GCCCTGTTTTGGCGCCCGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGCGCCGGTATCAGAGGGCAGT
TCAGCGATGCAGATGCATGCCATCTGGACCAGGCCTTTCCGCTGCTGATGAAACAACTGGAGCTCATGCTCACCAGTGGT
GAACTCAGCCCCCGCTATCAGCATACCGTCACGCTGTATGCGAAAGGACTGACTTGCGAAGCCGATACCCTGGGCTCCTG
TGGTTACGTTTATATGGCTGTTTATCCGACGCCCGAAACGAAACAGTAA
GTGTCAGACACACTCTCCGGGACAACGCATCCCGATGACAATCACGACCGTCCCTGGTGGGGGCTACCCTGCACCGTGAC
GCCCTGTTTTGGCGCCCGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGCGCCGGTATCAGAGGGCAGT
TCAGCGATGCAGATGCATGCCATCTGGACCAGGCCTTTCCGCTGCTGATGAAACAACTGGAGCTCATGCTCACCAGTGGT
GAACTCAGCCCCCGCTATCAGCATACCGTCACGCTGTATGCGAAAGGACTGACTTGCGAAGCCGATACCCTGGGCTCCTG
TGGTTACGTTTATATGGCTGTTTATCCGACGCCCGAAACGAAACAGTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|
Antitoxin
| Source | ID | Structure |
|---|