Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2666997..2667265 | Replicon | chromosome |
| Accession | NZ_CP028743 | ||
| Organism | Escherichia coli strain A32 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2667035..2667137 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2666997..2667265 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AOY85_RS13040 | 2664154..2665593 | + | 1440 | WP_001704100.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| AOY85_RS13045 | 2665711..2665947 | + | 237 | WP_001295499.1 | YebV family protein | - |
| AOY85_RS13050 | 2666052..2666243 | + | 192 | WP_001317886.1 | YebW family protein | - |
| AOY85_RS13055 | 2666244..2666900 | - | 657 | WP_000812742.1 | protein-serine/threonine phosphatase | - |
| - | 2666997..2667265 | + | 269 | - | - | Antitoxin |
| - | 2667035..2667137 | - | 103 | - | - | Toxin |
| AOY85_RS13060 | 2667295..2667636 | - | 342 | WP_000976472.1 | YebY family protein | - |
| AOY85_RS13065 | 2667649..2668521 | - | 873 | WP_000879320.1 | copper homeostasis membrane protein CopD | - |
| AOY85_RS13070 | 2668525..2668899 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| AOY85_RS13075 | 2669038..2669268 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| AOY85_RS13080 | 2669370..2670026 | + | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein YobB | - |
| AOY85_RS13085 | 2670049..2670711 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T103363 NZ_CP028743:c2667137-2667035 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT103363 NZ_CP028743:2666997-2667265 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
