Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2713918..2714186 | Replicon | chromosome |
| Accession | NZ_CP028742 | ||
| Organism | Escherichia coli strain A33 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2713956..2714058 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2713918..2714186 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AOY86_RS13135 | 2711075..2712514 | + | 1440 | WP_001704100.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| AOY86_RS13140 | 2712632..2712868 | + | 237 | WP_001295499.1 | YebV family protein | - |
| AOY86_RS13145 | 2712973..2713164 | + | 192 | WP_001317886.1 | YebW family protein | - |
| AOY86_RS13150 | 2713165..2713821 | - | 657 | WP_000812742.1 | protein-serine/threonine phosphatase | - |
| - | 2713918..2714186 | + | 269 | - | - | Antitoxin |
| - | 2713956..2714058 | - | 103 | - | - | Toxin |
| AOY86_RS13155 | 2714216..2714557 | - | 342 | WP_000976472.1 | YebY family protein | - |
| AOY86_RS13160 | 2714570..2715442 | - | 873 | WP_000879320.1 | copper homeostasis membrane protein CopD | - |
| AOY86_RS13165 | 2715446..2715820 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| AOY86_RS13170 | 2715959..2716189 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| AOY86_RS13175 | 2716291..2716947 | + | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein YobB | - |
| AOY86_RS13180 | 2716970..2717632 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T103336 NZ_CP028742:c2714058-2713956 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT103336 NZ_CP028742:2713918-2714186 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
