Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2042729..2043000 | Replicon | chromosome |
| Accession | NZ_CP028741 | ||
| Organism | Escherichia coli strain A34 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2042859..2042962 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2042729..2043000 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AOY87_RS10055 | 2039284..2039946 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| AOY87_RS10060 | 2039970..2040626 | - | 657 | WP_000011660.1 | carbon-nitrogen hydrolase family protein YobB | - |
| AOY87_RS10065 | 2040728..2040958 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| AOY87_RS10070 | 2041097..2041471 | + | 375 | WP_000168738.1 | CopC domain-containing protein YobA | - |
| AOY87_RS10075 | 2041475..2042347 | + | 873 | WP_000879286.1 | copper homeostasis membrane protein CopD | - |
| AOY87_RS10080 | 2042360..2042701 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2042729..2043000 | - | 272 | - | - | Antitoxin |
| - | 2042859..2042962 | + | 104 | - | - | Toxin |
| AOY87_RS10085 | 2043097..2043753 | + | 657 | WP_000812739.1 | protein-serine/threonine phosphatase | - |
| AOY87_RS10090 | 2043754..2043945 | - | 192 | WP_001313035.1 | YebW family protein | - |
| AOY87_RS10095 | 2044050..2044286 | - | 237 | WP_001295499.1 | YebV family protein | - |
| AOY87_RS10100 | 2044404..2045843 | - | 1440 | WP_240766057.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T103309 NZ_CP028741:2042859-2042962 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT103309 NZ_CP028741:c2043000-2042729 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
