Detailed information of TA system TA102554

Bioinformatically predicted

Overview

TA module

• Type: I
• Classification (family/domain): hok-sok/-
• Location: 3462755..3462980
• Replicon: chromosome
• Accession: NZ_CP028671
• Organism: Escherichia coli strain 116

Toxin (Protein)

• Gene name: hokW
• Uniprot ID: -
• Locus tag: C9E45_RS18185
• Protein ID: WP_000813263.1
• Coordinates: 3462755..3462910 (-)
• Length: 52 a.a.

Antitoxin (RNA)

Gene name	sokW
Locus tag	-
Coordinates	3462922..3462980 (+)

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
C9E45_RS18150	3458209..3458922	-	714	WP_000261909.1	helix-turn-helix domain-containing protein	-
C9E45_RS18155	3459060..3459256	-	197	Protein_3452	TrmB family transcriptional regulator	-
C9E45_RS18160	3459543..3460361	-	819	WP_000265265.1	CPBP family intramembrane metalloprotease	-
C9E45_RS18165	3460513..3460884	-	372	WP_000090264.1	antitermination protein	-
C9E45_RS18170	3460874..3461245	-	372	WP_001217436.1	RusA family crossover junction endodeoxyribonuclease	-
C9E45_RS18175	3461258..3462307	-	1050	WP_001265172.1	DUF968 domain-containing protein	-
C9E45_RS18180	3462309..3462587	-	279	WP_001341388.1	hypothetical protein	-
C9E45_RS18185	3462755..3462910	-	156	WP_000813263.1	type I toxin-antitoxin system toxin HokD	Toxin
-	3462922..3462980	+	59	-	-	Antitoxin
C9E45_RS18205	3463515..3464288	+	774	WP_000160654.1	alpha/beta hydrolase	-
C9E45_RS18210	3464640..3465053	-	414	WP_001151233.1	DUF977 family protein	-
C9E45_RS18215	3465069..3465839	-	771	WP_000450992.1	DUF1627 domain-containing protein	-
C9E45_RS18220	3465861..3466607	-	747	WP_000788751.1	ATP-binding protein	-
C9E45_RS18225	3466614..3467705	-	1092	WP_001205823.1	hypothetical protein	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Hok/gef cell toxic protein (6-47)

Sequences

Toxin

Protein

• Length: 52 a.a.
• Molecular weight: 5722.86 Da
• Isoelectric Point: 6.1531

>T102554 WP_000813263.1 NZ_CP028671:c3462910-3462755 [Escherichia coli]
MKQQKAMLIALIVICLTVIVTALVTRKDLCEVRVRTGQTEVAVFTAYEPEE

Nucleotide

• Length: 156 bp

>T102554 NZ_CP028671:c3462910-3462755 [Escherichia coli]
ATGAAGCAGCAAAAGGCGATGTTAATCGCCCTGATCGTCATCTGTTTAACCGTCATAGTGACGGCACTGGTAACGAGGAA
AGACCTCTGCGAGGTACGAGTCCGAACCGGCCAGACGGAGGTCGCTGTCTTCACAGCTTACGAACCTGAGGAGTAA

Antitoxin

Nucleotide

• Length: 59 bp

>AT102554 NZ_CP028671:3462922-3462980 [Escherichia coli]
CCTTGCCTTTCGGCACGTAAGAGGCTAACCTAGATTTGCCGTTCATAGATTGAGCCTCA

Structures

Antitoxin