Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2195233..2195504 | Replicon | chromosome |
| Accession | NZ_CP028654 | ||
| Organism | Escherichia coli strain 122 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2195363..2195466 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2195233..2195504 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C9E51_RS11105 | 2191788..2192450 | - | 663 | WP_000944243.1 | exodeoxyribonuclease X | - |
| C9E51_RS11110 | 2192474..2193130 | - | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein | - |
| C9E51_RS11115 | 2193232..2193462 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| C9E51_RS11120 | 2193601..2193975 | + | 375 | WP_000168751.1 | CopC domain-containing protein YobA | - |
| C9E51_RS11125 | 2193979..2194851 | + | 873 | WP_000879314.1 | copper homeostasis membrane protein CopD | - |
| C9E51_RS11130 | 2194864..2195205 | + | 342 | WP_000976483.1 | YebY family protein | - |
| - | 2195233..2195504 | - | 272 | - | - | Antitoxin |
| - | 2195363..2195466 | + | 104 | - | - | Toxin |
| C9E51_RS11135 | 2195601..2196257 | + | 657 | WP_000812736.1 | protein-serine/threonine phosphatase | - |
| C9E51_RS11140 | 2196258..2196449 | - | 192 | WP_001296140.1 | YebW family protein | - |
| C9E51_RS11145 | 2196554..2196790 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| C9E51_RS11150 | 2196908..2198347 | - | 1440 | WP_001302304.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T102329 NZ_CP028654:2195363-2195466 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT102329 NZ_CP028654:c2195504-2195233 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
