Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2150133..2150404 | Replicon | chromosome |
| Accession | NZ_CP028589 | ||
| Organism | Escherichia coli strain WCHEC4533 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2150263..2150366 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2150133..2150404 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DBR03_RS12400 | 2146688..2147350 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| DBR03_RS12405 | 2147374..2148030 | - | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein | - |
| DBR03_RS12410 | 2148132..2148362 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| DBR03_RS12415 | 2148501..2148875 | + | 375 | WP_000204705.1 | CopC domain-containing protein YobA | - |
| DBR03_RS12420 | 2148879..2149751 | + | 873 | WP_000879330.1 | copper homeostasis membrane protein CopD | - |
| DBR03_RS12425 | 2149764..2150105 | + | 342 | WP_001520705.1 | YebY family protein | - |
| - | 2150133..2150404 | - | 272 | - | - | Antitoxin |
| - | 2150263..2150366 | + | 104 | - | - | Toxin |
| DBR03_RS12430 | 2150501..2151157 | + | 657 | WP_001520704.1 | protein-serine/threonine phosphatase | - |
| DBR03_RS12435 | 2151158..2151349 | - | 192 | WP_001296140.1 | YebW family protein | - |
| DBR03_RS12440 | 2151454..2151690 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| DBR03_RS12445 | 2151808..2153247 | - | 1440 | WP_024166480.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T101550 NZ_CP028589:2150263-2150366 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT101550 NZ_CP028589:c2150404-2150133 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
