Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3028775..3028920 | Replicon | chromosome |
| Accession | NZ_CP028542 | ||
| Organism | Klebsiella pneumoniae strain WCHKP2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3028782..3028884 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3028775..3028920 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CAY63_RS16950 | 3024307..3025740 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| CAY63_RS16955 | 3025856..3026095 | + | 240 | WP_002911393.1 | YebV family protein | - |
| CAY63_RS16960 | 3026193..3026384 | + | 192 | WP_002911395.1 | YebW family protein | - |
| CAY63_RS16965 | 3026381..3027034 | - | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| CAY63_RS16970 | 3027269..3028159 | + | 891 | WP_085353163.1 | VirK/YbjX family protein | - |
| CAY63_RS16975 | 3028549..3028740 | + | 192 | WP_004175432.1 | hypothetical protein | - |
| - | 3028775..3028920 | + | 146 | - | - | Antitoxin |
| - | 3028782..3028884 | - | 103 | - | - | Toxin |
| CAY63_RS16980 | 3029043..3029384 | - | 342 | WP_015874944.1 | YebY family protein | - |
| CAY63_RS16985 | 3029398..3030267 | - | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| CAY63_RS16990 | 3030271..3030645 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| CAY63_RS16995 | 3030758..3030988 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| CAY63_RS17000 | 3031067..3031726 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| CAY63_RS17005 | 3031730..3033790 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T101390 NZ_CP028542:c3028884-3028782 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT101390 NZ_CP028542:3028775-3028920 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
