Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2284425..2284696 | Replicon | chromosome |
| Accession | NZ_CP028429 | ||
| Organism | Escherichia coli strain RM9131 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2284463..2284566 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2284425..2284696 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ECRM9131_RS12320 | 2281582..2283021 | + | 1440 | WP_000057021.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| ECRM9131_RS12325 | 2283139..2283375 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| ECRM9131_RS12330 | 2283480..2283671 | + | 192 | WP_001296140.1 | YebW family protein | - |
| ECRM9131_RS12335 | 2283672..2284328 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2284425..2284696 | + | 272 | - | - | Antitoxin |
| - | 2284463..2284566 | - | 104 | - | - | Toxin |
| ECRM9131_RS12340 | 2284724..2285065 | - | 342 | WP_000976492.1 | YebY family protein | - |
| ECRM9131_RS12345 | 2285078..2285950 | - | 873 | WP_000879274.1 | copper homeostasis membrane protein CopD | - |
| ECRM9131_RS12350 | 2285954..2286328 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| ECRM9131_RS12355 | 2286467..2286697 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| ECRM9131_RS12360 | 2286799..2287455 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| ECRM9131_RS12365 | 2287479..2288141 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T101161 NZ_CP028429:c2284566-2284463 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT101161 NZ_CP028429:2284425-2284696 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
