TAfinder detailed results
Overview
| Job ID | wrVbGpMxFf | ||
| Sequence name | NZ_CP026085.1 Escherichia coli strain DH5alpha chromosome, complete genome | ||
| Predicted type | II | ||
Orphan Antitoxin (Protein)
| Predicted family | vapB (AT6245) | Predicted domain | PF00440 (TetR_N) |
| Locus tag | orf3335 | Length | 215 a.a. |
| Coordinates | 3537873..3538520 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| orf3329 | 3533022..3533399 | - | 378 | ORF3329 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf3330 | 3533469..3533996 | + | 528 | ORF3330 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf3331 | 3534010..3534171 | + | 162 | ORF3331 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf3332 | 3534383..3537745 | - | 3363 | ORF3332 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf3333 | 3537873..3538520 | - | 648 | ORF3333 | Predicted ORF by PRODIGAL Version 1.20 | Antitoxin |
| orf3334 | 3538662..3539855 | + | 1194 | ORF3334 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf3335 | 3539878..3543027 | + | 3150 | ORF3335 | Predicted ORF by PRODIGAL Version 1.20 | - |
Domains
The domains were predicted by HMMER and were sorted by score.
Orphan Antitoxin
No domain identified.
Sequences
Orphan Antitoxin
Download Length: Molecular weight: 24766.65 Da Isoelectric Point: 5.6966
>ORF3333 Orphan_TA_80 Antitoxin
MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFS
EIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFV
GEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLF
APQSFDLKKEARDYVAILLEMYLLCPTLRNPATNE
MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFS
EIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVTEERRRLLMEIIFHKCEFV
GEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMTRRAAIIMRGYISGLMENWLF
APQSFDLKKEARDYVAILLEMYLLCPTLRNPATNE
Download Length: 648 bp
>ORF3333 Orphan_TA_80 Antitoxin
TTATTCGTTAGTGGCAGGATTACGAAGCGTGGGGCACAGGAGATACATCTCCAGTAAGAT
GGCGACGTAATCGCGGGCTTCTTTTTTAAGATCAAAAGATTGCGGGGCAAAGAGCCAGTT
TTCCATCAGGCCGGAAATATAGCCGCGCATAATAATTGCTGCCCGACGCGTCATTAAATC
CGCAGGCAACATTTTCGCTTCAATACAATGTTTTAACGTTTGTTCTATACGGTCATAACT
TTCCAGACAGAGATTACGTTGTGCCTGTTGCACAACAGCCATTTCTCCGACAAATTCGCA
TTTGTGGAATATAATCTCCATCAATAATCGACGTCGTTCTTCTGTCACCGTGGATTCAAG
AACATGAATTAATATCTCTCTTAATACTGAGAGTGGATCGCCAGGGAATTTTGCCTGATA
CTCAAGCTCTAGTTCACCAATATTGGATTCTGACAGTTCCCAGATCTCACTGAACAAATC
CGACTTGTCTTTAAAATGCCAGTAGATTGCACCGCGCGTAACGCCAGCTGCTTTTGCAAT
CTCGCCCAGCGAGGTGGATGATACCCCCTGCTGTGAGAAAAGACGTAGAGCCACATCGAG
GATGTGTTGGCGCGTTTCTTGCGCTTCTTGTTTGGTTTTTCGTGCCAT
TTATTCGTTAGTGGCAGGATTACGAAGCGTGGGGCACAGGAGATACATCTCCAGTAAGAT
GGCGACGTAATCGCGGGCTTCTTTTTTAAGATCAAAAGATTGCGGGGCAAAGAGCCAGTT
TTCCATCAGGCCGGAAATATAGCCGCGCATAATAATTGCTGCCCGACGCGTCATTAAATC
CGCAGGCAACATTTTCGCTTCAATACAATGTTTTAACGTTTGTTCTATACGGTCATAACT
TTCCAGACAGAGATTACGTTGTGCCTGTTGCACAACAGCCATTTCTCCGACAAATTCGCA
TTTGTGGAATATAATCTCCATCAATAATCGACGTCGTTCTTCTGTCACCGTGGATTCAAG
AACATGAATTAATATCTCTCTTAATACTGAGAGTGGATCGCCAGGGAATTTTGCCTGATA
CTCAAGCTCTAGTTCACCAATATTGGATTCTGACAGTTCCCAGATCTCACTGAACAAATC
CGACTTGTCTTTAAAATGCCAGTAGATTGCACCGCGCGTAACGCCAGCTGCTTTTGCAAT
CTCGCCCAGCGAGGTGGATGATACCCCCTGCTGTGAGAAAAGACGTAGAGCCACATCGAG
GATGTGTTGGCGCGTTTCTTGCGCTTCTTGTTTGGTTTTTCGTGCCAT
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| AT6245 | Mycobacterium tuberculosis H37Rv |
37.705 |
15.025 |
0.107 |
| AT6245 | Mycobacterium tuberculosis H37Rv |
29.787 |
11.576 |
0.065 |