TAfinder detailed results
Overview
| Job ID | wrVbGpMxFf | ||
| Sequence name | NZ_CP026085.1 Escherichia coli strain DH5alpha chromosome, complete genome | ||
| Predicted type | II | ||
Orphan Antitoxin (Protein)
| Predicted family | vapB (AT950) | Predicted domain | - |
| Locus tag | orf1958 | Length | 115 a.a. |
| Coordinates | 2074269..2074616 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| orf1946 | 2069828..2070187 | + | 360 | ORF1946 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf1947 | 2070191..2070379 | + | 189 | ORF1947 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf1948 | 2070395..2070826 | - | 432 | ORF1948 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf1949 | 2070894..2072042 | + | 1149 | ORF1949 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf1950 | 2072270..2072518 | + | 249 | ORF1950 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf1951 | 2072785..2073810 | - | 1026 | ORF1951 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf1952 | 2073993..2074247 | + | 255 | ORF1952 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf1953 | 2074269..2074616 | - | 348 | ORF1953 | Predicted ORF by PRODIGAL Version 1.20 | Antitoxin |
| orf1954 | 2074671..2075852 | - | 1182 | ORF1954 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf1955 | 2075952..2076770 | + | 819 | ORF1955 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf1956 | 2076727..2077173 | - | 447 | ORF1956 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf1957 | 2077448..2077951 | - | 504 | ORF1957 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf1958 | 2077994..2079484 | - | 1491 | ORF1958 | Predicted ORF by PRODIGAL Version 1.20 | - |
Domains
The domains were predicted by HMMER and were sorted by score.
Orphan Antitoxin
No domain identified.
Sequences
Orphan Antitoxin
Download Length: Molecular weight: 13340.19 Da Isoelectric Point: 6.7213
>ORF1953 Orphan_TA_37 Antitoxin
MNIQCKRVYDPAEQSDGYRVLVDRLWPRGIKKTDLALDEWDKEITPSTELRKAFHGEVVD
FATFREQYLAELAQHEQEGKRLADIAKKQPLTLLYAAKNTTQNHALVLADWLRSL
MNIQCKRVYDPAEQSDGYRVLVDRLWPRGIKKTDLALDEWDKEITPSTELRKAFHGEVVD
FATFREQYLAELAQHEQEGKRLADIAKKQPLTLLYAAKNTTQNHALVLADWLRSL
Download Length: 348 bp
>ORF1953 Orphan_TA_37 Antitoxin
TCACAAGCTACGTAGCCAGTCGGCCAGCACCAGCGCATGGTTCTGCGTGGTGTTTTTTGC
TGCGTAGAGCAGGGTCAGCGGCTGTTTTTTGGCGATGTCCGCCAGCCGCTTTCCTTCTTG
CTCGTGTTGCGCCAGTTCTGCAAGATATTGCTCGCGAAAGGTTGCAAAATCGACGACTTC
GCCGTGAAAGGCTTTGCGCAGTTCCGTTGACGGCGTGATTTCTTTATCCCACTCATCAAG
GGCTAAATCGGTTTTTTTGATACCGCGCGGCCAGAGGCGGTCGACCAGTACGCGATAACC
ATCGCTCTGTTCAGCCGGATCATAAACGCGTTTGCACTGAATATTCAT
TCACAAGCTACGTAGCCAGTCGGCCAGCACCAGCGCATGGTTCTGCGTGGTGTTTTTTGC
TGCGTAGAGCAGGGTCAGCGGCTGTTTTTTGGCGATGTCCGCCAGCCGCTTTCCTTCTTG
CTCGTGTTGCGCCAGTTCTGCAAGATATTGCTCGCGAAAGGTTGCAAAATCGACGACTTC
GCCGTGAAAGGCTTTGCGCAGTTCCGTTGACGGCGTGATTTCTTTATCCCACTCATCAAG
GGCTAAATCGGTTTTTTTGATACCGCGCGGCCAGAGGCGGTCGACCAGTACGCGATAACC
ATCGCTCTGTTCAGCCGGATCATAAACGCGTTTGCACTGAATATTCAT
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| AT950 | Sulfolobus solfataricus P2 |
45.455 |
95.652 |
0.435 |