TAfinder detailed results
Overview
| Job ID | wrVbGpMxFf | ||
| Sequence name | NZ_CP026085.1 Escherichia coli strain DH5alpha chromosome, complete genome | ||
| Predicted type | VIII | ||
Toxin (RNA)
| Predicted family | SdsR (T10165) | Predicted domain | - |
| Locus tag | NuclT_0 | Length | 104 bp |
| Coordinates | 2026344..2026447 (+) |
Antitoxin (RNA)
| Predicted family | RyeA (AT10165) | Predicted domain | - |
| Locus tag | NuclAT_0 | Length | 272 bp |
| Coordinates | 2026214..2026485 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| orf1899 | 2022769..2023431 | - | 663 | ORF1899 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf1900 | 2023455..2024111 | - | 657 | ORF1900 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf1901 | 2024213..2024443 | - | 231 | ORF1901 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf1902 | 2024582..2024956 | + | 375 | ORF1902 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf1903 | 2024960..2025832 | + | 873 | ORF1903 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf1904 | 2025845..2026186 | + | 342 | ORF1904 | Predicted ORF by PRODIGAL Version 1.20 | - |
| - | 2026214..2026485 | - | 819 | - | - | Antitoxin |
| - | 2026344..2026447 | + | 315 | - | - | Toxin |
| orf1905 | 2026582..2027238 | + | 657 | ORF1905 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf1906 | 2027239..2027514 | - | 276 | ORF1906 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf1907 | 2027535..2027771 | - | 237 | ORF1907 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf1908 | 2027889..2029334 | - | 1446 | ORF1908 | Predicted ORF by PRODIGAL Version 1.20 | - |
Sequences
Toxin
Download Length: 104 bp
>NuclT_0 TA_16 Toxin
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGC
CATTTCCCTGGACCGAATACAGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGC
CATTTCCCTGGACCGAATACAGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>NuclAT_0 TA_16 Antitoxin
ATAAAAAAACCGCCTCAGTTCTTTCACCAGAACGGGCGGTTTTTAACATTTCAGCTGATG
ACCACCACGCTTTTTATTGACCATTTTGCACGCAAACTGGAAAACCTGGCGTCGTCATCT
ATTCTTAAAGGGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTC
TCCCAAGAGCCATTTCCCTGGACCGAATACAGGAATCGTGTTCGGTCTCTTTTTATCTGT
TAAAAGCCAGAAGCATTTCCTTCGCTGACTTT
ATAAAAAAACCGCCTCAGTTCTTTCACCAGAACGGGCGGTTTTTAACATTTCAGCTGATG
ACCACCACGCTTTTTATTGACCATTTTGCACGCAAACTGGAAAACCTGGCGTCGTCATCT
ATTCTTAAAGGGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTC
TCCCAAGAGCCATTTCCCTGGACCGAATACAGGAATCGTGTTCGGTCTCTTTTTATCTGT
TAAAAGCCAGAAGCATTTCCTTCGCTGACTTT