TAfinder detailed results
Overview
| Job ID | wrVbGpMxFf | ||
| Sequence name | NZ_CP026085.1 Escherichia coli strain DH5alpha chromosome, complete genome | ||
| Predicted type | II | ||
Orphan Antitoxin (Protein)
| Predicted family | relB (AT10123) | Predicted domain | PF13443 (HTH_26) |
| Locus tag | orf2352 | Length | 178 a.a. |
| Coordinates | 2486497..2487033 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| orf2343 | 2481796..2483202 | - | 1407 | ORF2343 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf2344 | 2483281..2483718 | - | 438 | ORF2344 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf2345 | 2483743..2483919 | - | 177 | ORF2345 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf2346 | 2484201..2484371 | + | 171 | ORF2346 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf2347 | 2484463..2486424 | - | 1962 | ORF2347 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf2348 | 2486497..2487033 | - | 537 | ORF2348 | Predicted ORF by PRODIGAL Version 1.20 | Antitoxin |
| orf2349 | 2487125..2488300 | + | 1176 | ORF2349 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf2350 | 2488340..2489488 | - | 1149 | ORF2350 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf2351 | 2490075..2490743 | - | 669 | ORF2351 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf2352 | 2491046..2491639 | - | 594 | ORF2352 | Predicted ORF by PRODIGAL Version 1.20 | - |
Domains
The domains were predicted by HMMER and were sorted by score.
Orphan Antitoxin
No domain identified.
Sequences
Orphan Antitoxin
Download Length: Molecular weight: 19731.30 Da Isoelectric Point: 6.1280
>ORF2348 Orphan_TA_52 Antitoxin
MENLARFLSTTLKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLN
VPFSTFISPPQSATPSVYDPQQQAMVITSLFPYDPQLCFEHFSIQMASGAISESTPHEKG
VIEHVVVIDGQLDLCVDGEWQTLNCGEGVRFAADVTHIYRNGGEQTVHFHSLIHYPRS
MENLARFLSTTLKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLN
VPFSTFISPPQSATPSVYDPQQQAMVITSLFPYDPQLCFEHFSIQMASGAISESTPHEKG
VIEHVVVIDGQLDLCVDGEWQTLNCGEGVRFAADVTHIYRNGGEQTVHFHSLIHYPRS
Download Length: 537 bp
>ORF2348 Orphan_TA_52 Antitoxin
TTAACTGCGCGGGTAATGGATGAGGGAATGAAAATGTACGGTTTGCTCCCCACCATTACG
ATAGATATGCGTGACGTCTGCAGCAAATCGAACGCCTTCCCCACAATTAAGGGTCTGCCA
TTCCCCATCAACGCACAGATCAAGTTGTCCATCAATGACGACGACATGTTCGATTACCCC
CTTCTCATGGGGCGTCGATTCGCTTATTGCACCAGATGCCATCTGAATCGAGAAGTGTTC
GAAGCAGAGTTGTGGATCATAAGGAAACAGCGAAGTGATCACCATCGCCTGCTGTTGTGG
ATCATAAACTGAAGGCGTAGCGGACTGCGGCGGAGAAATAAATGTTGAAAATGGTACGTT
CAACCCGGTGGCAATTTTCCATAATGTCGCGACCGTCGGACTGGACTCATTACGCTCAAT
CTGCCCTAACATTGCTTTAGAAACGCCCGTCGCTTCTGCCAGTCGCGAAAGACTCCAGCC
GCGCTGCTGGCGTAGTTGTTTAAGTGTGGTGGATAAAAAGCGAGCGAGATTTTCCAT
TTAACTGCGCGGGTAATGGATGAGGGAATGAAAATGTACGGTTTGCTCCCCACCATTACG
ATAGATATGCGTGACGTCTGCAGCAAATCGAACGCCTTCCCCACAATTAAGGGTCTGCCA
TTCCCCATCAACGCACAGATCAAGTTGTCCATCAATGACGACGACATGTTCGATTACCCC
CTTCTCATGGGGCGTCGATTCGCTTATTGCACCAGATGCCATCTGAATCGAGAAGTGTTC
GAAGCAGAGTTGTGGATCATAAGGAAACAGCGAAGTGATCACCATCGCCTGCTGTTGTGG
ATCATAAACTGAAGGCGTAGCGGACTGCGGCGGAGAAATAAATGTTGAAAATGGTACGTT
CAACCCGGTGGCAATTTTCCATAATGTCGCGACCGTCGGACTGGACTCATTACGCTCAAT
CTGCCCTAACATTGCTTTAGAAACGCCCGTCGCTTCTGCCAGTCGCGAAAGACTCCAGCC
GCGCTGCTGGCGTAGTTGTTTAAGTGTGGTGGATAAAAAGCGAGCGAGATTTTCCAT
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| AT10195 | Escherichia coli strain BL21 (TaKaRa) |
29.73 |
84.091 |
0.124 |
| AT1040 | Escherichia coli str. K-12 substr. MG1655 |
29.73 |
84.091 |
0.124 |
| AT10098 | Escherichia coli Nissle 1917 |
28.378 |
84.091 |
0.118 |
| AT10123 | Paracoccus phage vB_PkoS_Pkon1 |
32.143 |
49.558 |
0.101 |
| AT1067 | Haemophilus influenzae Rd KW20 |
34.694 |
50 |
0.096 |
| AT325 | Streptococcus pneumoniae TIGR4 |
30 |
51.546 |
0.084 |
| AT1005 | Escherichia coli O157:H7 str. Sakai |
40.541 |
33.945 |
0.084 |
| AT611 | Staphylococcus aureus subsp. aureus MW2 |
30 |
46.729 |
0.084 |