TAfinder detailed results
Overview
| Job ID | 9mizKMmBqU | ||
| Sequence name | Escherichia coli strain DH5alpha chromosome, complete genome. | ||
| Predicted type | II | ||
Orphan Antitoxin (Protein)
| Predicted family | stbD (AT6130) | Predicted domain | PRK02854 (DnaT) |
| Locus tag | C1467_RS21400 | Length | 179 a.a. |
| Coordinates | 4123222..4123761 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1467_RS21350 | 4118699..4118935 | - | 237 | WP_001350028.1 | DUF1435 domain-containing protein | - |
| C1467_RS21355 | 4119076..4119864 | + | 789 | WP_000331602.1 | siderophore-iron reductase FhuF | - |
| C1467_RS21360 | 4119902..4120579 | - | 678 | WP_001301727.1 | DNA-binding transcriptional activator BglJ | - |
| C1467_RS21365 | 4120537..4121262 | - | 726 | WP_000936630.1 | response regulator transcription factor | - |
| C1467_RS21370 | 4121881..4122651 | + | 771 | WP_001340933.1 | threonine/serine exporter ThrE family protein | - |
| C1467_RS21375 | 4122642..4123115 | + | 474 | WP_000538188.1 | threonine/serine exporter | - |
| C1467_RS21380 | 4123222..4123761 | + | 540 | WP_000098818.1 | primosomal protein DnaT | Antitoxin |
| C1467_RS21385 | 4123764..4124501 | + | 738 | WP_000799911.1 | DNA replication protein DnaC | - |
| C1467_RS21390 | 4124550..4125044 | + | 495 | WP_001350029.1 | DUF2501 domain-containing protein YjjA | - |
| C1467_RS21395 | 4125298..4127307 | + | 2010 | Protein_3946 | phosphatidylglycerol--membrane-oligosaccharide glycerophosphotransferase | - |
| C1467_RS21400 | 4127414..4128622 | + | 1209 | WP_006250222.1 | IS4-like element ISVsa5 family transposase | - |
Domains
The domains were predicted by HMMER and were sorted by score.
Orphan Antitoxin
No domain identified.
Sequences
Orphan Antitoxin
Download Length: Molecular weight: 19455.12 Da Isoelectric Point: 4.9645
>WP_000098818.1 Orphan_TA_99 Antitoxin
MSSRVLTPDVVGIDALVHDHQTVLAKAEGGVVAVFANNAPAFYAVTPARLAELLALEEKL
ARPGSDVALDDQLYQEPQAAPVAVPMGKFAMYPDWQPDADFIRLAALWGVALREPVTTEE
LASFIAYWQAEGKVFHHVQWQQKLARSLQIGRASNGGLPKRDVNTVSEPDSQIPPGFRG*
MSSRVLTPDVVGIDALVHDHQTVLAKAEGGVVAVFANNAPAFYAVTPARLAELLALEEKL
ARPGSDVALDDQLYQEPQAAPVAVPMGKFAMYPDWQPDADFIRLAALWGVALREPVTTEE
LASFIAYWQAEGKVFHHVQWQQKLARSLQIGRASNGGLPKRDVNTVSEPDSQIPPGFRG*
Download Length: 540 bp
>WP_000098818.1 Orphan_TA_99 Antitoxin
ATGTCTTCCAGAGTTTTGACCCCGGACGTCGTTGGTATTGACGCCCTGGTACACGATCAC
CAAACCGTTCTGGCAAAAGCTGAAGGCGGTGTGGTTGCCGTATTTGCTAACAATGCCCCG
GCGTTTTATGCCGTCACGCCTGCACGCCTGGCTGAACTGCTGGCGCTGGAAGAAAAGCTG
GCGCGTCCGGGAAGCGATGTCGCTCTGGACGATCAACTCTATCAGGAACCGCAAGCCGCT
CCCGTTGCTGTCCCCATGGGGAAATTCGCCATGTATCCGGACTGGCAACCCGATGCCGAC
TTTATCCGCCTGGCGGCGCTATGGGGCGTGGCGCTAAGAGAGCCGGTGACCACCGAAGAA
CTGGCCTCATTCATTGCCTACTGGCAGGCGGAAGGTAAAGTCTTTCACCATGTGCAGTGG
CAACAAAAACTGGCGCGCAGCCTGCAAATCGGTCGTGCCAGCAACGGCGGACTGCCGAAA
CGAGATGTGAATACGGTCAGCGAACCTGACAGCCAAATTCCACCAGGATTCAGAGGGTAA
ATGTCTTCCAGAGTTTTGACCCCGGACGTCGTTGGTATTGACGCCCTGGTACACGATCAC
CAAACCGTTCTGGCAAAAGCTGAAGGCGGTGTGGTTGCCGTATTTGCTAACAATGCCCCG
GCGTTTTATGCCGTCACGCCTGCACGCCTGGCTGAACTGCTGGCGCTGGAAGAAAAGCTG
GCGCGTCCGGGAAGCGATGTCGCTCTGGACGATCAACTCTATCAGGAACCGCAAGCCGCT
CCCGTTGCTGTCCCCATGGGGAAATTCGCCATGTATCCGGACTGGCAACCCGATGCCGAC
TTTATCCGCCTGGCGGCGCTATGGGGCGTGGCGCTAAGAGAGCCGGTGACCACCGAAGAA
CTGGCCTCATTCATTGCCTACTGGCAGGCGGAAGGTAAAGTCTTTCACCATGTGCAGTGG
CAACAAAAACTGGCGCGCAGCCTGCAAATCGGTCGTGCCAGCAACGGCGGACTGCCGAAA
CGAGATGTGAATACGGTCAGCGAACCTGACAGCCAAATTCCACCAGGATTCAGAGGGTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| AT6130 | Erwinia pyrifoliae Ep1/96 |
34.524 |
100 |
0.161 |
| AT10166 | Xenorhabdus nematophila ATCC 19061 |
39.655 |
69.88 |
0.128 |
| AT6132 | Escherichia coli |
29.762 |
100 |
0.139 |
| AT6131 | Escherichia coli |
29.762 |
100 |
0.139 |
| AT173 | Vibrio cholerae O1 biovar El Tor str. N16961 |
32.927 |
100 |
0.15 |