TAfinder detailed results
Overview
| Job ID | 9mizKMmBqU | ||
| Sequence name | Escherichia coli strain DH5alpha chromosome, complete genome. | ||
| Predicted type | II | ||
Orphan Antitoxin (Protein)
| Predicted family | - (AT183) | Predicted domain | - |
| Locus tag | C1467_RS21220 | Length | 289 a.a. |
| Coordinates | 4090859..4091728 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1467_RS21175 | 4085872..4086579 | + | 708 | WP_047335277.1 | two-component system response regulator ArcA | - |
| C1467_RS21180 | 4086639..4087991 | - | 1353 | WP_000920343.1 | cell envelope integrity protein CreD | - |
| C1467_RS21185 | 4088049..4089473 | - | 1425 | WP_001219604.1 | two-component system sensor histidine kinase CreC | - |
| C1467_RS21190 | 4089473..4090162 | - | 690 | WP_001188659.1 | two-component system response regulator CreB | - |
| C1467_RS21195 | 4090175..4090648 | - | 474 | WP_000875487.1 | protein CreA | - |
| C1467_RS21200 | 4090859..4091728 | + | 870 | WP_000371666.1 | MDR efflux pump AcrAB transcriptional activator RobA | Antitoxin |
| C1467_RS21205 | 4091725..4092372 | - | 648 | WP_000942344.1 | 2,3-diphosphoglycerate-dependent phosphoglycerate mutase GpmB | - |
| C1467_RS21210 | 4092424..4092936 | + | 513 | WP_001338221.1 | inosine/xanthosine triphosphatase | - |
| C1467_RS21215 | 4092978..4093304 | - | 327 | WP_000068679.1 | trp operon repressor | - |
| C1467_RS21220 | 4093394..4095331 | - | 1938 | WP_000409451.1 | murein transglycosylase | - |
Domains
The domains were predicted by HMMER and were sorted by score.
Orphan Antitoxin
No domain identified.
Sequences
Orphan Antitoxin
Download Length: Molecular weight: 33144.89 Da Isoelectric Point: 7.1051
>WP_000371666.1 Orphan_TA_97 Antitoxin
MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS
KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL
GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYG
LNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFI
LTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR*
MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS
KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL
GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYG
LNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFI
LTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR*
Download Length: 870 bp
>WP_000371666.1 Orphan_TA_97 Antitoxin
ATGGATCAGGCCGGCATTATTCGCGACCTTTTAATCTGGCTGGAAGGTCATCTGGATCAG
CCCCTGTCGCTCGACAATGTAGCGGCGAAAGCAGGTTATTCCAAGTGGCACTTACAGAGA
ATGTTTAAAGATGTCACTGGCCATGCTATTGGCGCGTATATTCGTGCTCGTCGTTTGTCG
AAATCGGCGGTCGCACTACGCCTGACTGCGCGTCCGATTCTGGACATCGCGCTGCAATAC
CGCTTCGACTCTCAACAGACATTTACCCGCGCATTCAAGAAGCAGTTTGCCCAGACTCCT
GCACTTTACCGCCGTTCTCCTGAATGGAGCGCCTTTGGTATTCGCCCGCCGCTACGTCTG
GGTGAATTCACAATGCCAGAGCACAAATTTGTCACCCTGGAAGATACGCCGCTGATTGGT
GTTACCCAGAGCTACTCCTGTTCGCTGGAGCAAATCTCTGATTTCCGCCATGAAATGCGT
TATCAGTTCTGGCACGATTTTCTCGGCAACGCGCCGACCATTCCGCCGGTGCTCTACGGC
CTGAATGAAACGCGTCCGAGTCAGGATAAAGACGACGAACAAGAGGTATTCTATACCACC
GCGTTAGCCCAGGATCAGGCAGATGGCTATGTACTGACGGGGCATCCGGTGATGCTGCAG
GGCGGCGAATATGTGATGTTTACCTATGAAGGTCTGGGAACCGGCGTGCAGGAGTTTATC
CTGACGGTATACGGAACGTGCATGCCAATGCTCAATCTGACGCGCCGTAAAGGTCAGGAT
ATTGAGCGATACTACCCGGCAGAAGATGCCAAAGCGGGAGATCGCCCAATTAATCTGCGC
TGTGAACTGCTGATTCCGATCCGTCGTTAA
ATGGATCAGGCCGGCATTATTCGCGACCTTTTAATCTGGCTGGAAGGTCATCTGGATCAG
CCCCTGTCGCTCGACAATGTAGCGGCGAAAGCAGGTTATTCCAAGTGGCACTTACAGAGA
ATGTTTAAAGATGTCACTGGCCATGCTATTGGCGCGTATATTCGTGCTCGTCGTTTGTCG
AAATCGGCGGTCGCACTACGCCTGACTGCGCGTCCGATTCTGGACATCGCGCTGCAATAC
CGCTTCGACTCTCAACAGACATTTACCCGCGCATTCAAGAAGCAGTTTGCCCAGACTCCT
GCACTTTACCGCCGTTCTCCTGAATGGAGCGCCTTTGGTATTCGCCCGCCGCTACGTCTG
GGTGAATTCACAATGCCAGAGCACAAATTTGTCACCCTGGAAGATACGCCGCTGATTGGT
GTTACCCAGAGCTACTCCTGTTCGCTGGAGCAAATCTCTGATTTCCGCCATGAAATGCGT
TATCAGTTCTGGCACGATTTTCTCGGCAACGCGCCGACCATTCCGCCGGTGCTCTACGGC
CTGAATGAAACGCGTCCGAGTCAGGATAAAGACGACGAACAAGAGGTATTCTATACCACC
GCGTTAGCCCAGGATCAGGCAGATGGCTATGTACTGACGGGGCATCCGGTGATGCTGCAG
GGCGGCGAATATGTGATGTTTACCTATGAAGGTCTGGGAACCGGCGTGCAGGAGTTTATC
CTGACGGTATACGGAACGTGCATGCCAATGCTCAATCTGACGCGCCGTAAAGGTCAGGAT
ATTGAGCGATACTACCCGGCAGAAGATGCCAAAGCGGGAGATCGCCCAATTAATCTGCGC
TGTGAACTGCTGATTCCGATCCGTCGTTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| AT183 | Pseudomonas aeruginosa PAO1 |
34.653 |
35.563 |
0.121 |