TAfinder detailed results

Overview

Job ID 9mizKMmBqU
Sequence name Escherichia coli strain DH5alpha chromosome, complete genome.
Predicted type II

Orphan Antitoxin (Protein)


Predicted family vapB (AT6245) Predicted domain PF00440 (TetR_N)
Locus tag C1467_RS20430 Length 197 a.a.
Coordinates 3924203..3924796 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
C1467_RS20355 3919661..3920230 + 570 WP_000598300.1 fimbrial protein -
C1467_RS20360 3920242..3920847 + 606 WP_001310526.1 fimbrial-like protein YadL -
C1467_RS20365 3920874..3921470 + 597 WP_000553749.1 fimbrial-like protein -
C1467_RS20370 3921520..3922374 + 855 Protein_3755 fimbrial tip-adhesin YadC -
C1467_RS20380 3922481..3923689 + 1209 WP_001339197.1 IS4-like element ISVsa5 family transposase -
C1467_RS20385 3923699..3924115 - 417 WP_000275180.1 AraC family transcriptional regulator -
C1467_RS20390 3924203..3924796 + 594 WP_000428546.1 tetracyline resistance-associated transcriptional repressor TetC Antitoxin
C1467_RS20395 3924909..3925643 - 735 Protein_3759 MFS transporter -
C1467_RS20405 3925753..3926961 + 1209 WP_001339197.1 IS4-like element ISVsa5 family transposase -
C1467_RS20410 3926973..3927452 - 480 Protein_3761 MFS transporter -
C1467_RS20415 3927534..3928157 + 624 WP_000088605.1 tetracycline resistance transcriptional repressor TetR(B) -
C1467_RS20420 3928135..3928821 - 687 WP_001284954.1 winged helix-turn-helix domain-containing protein -
C1467_RS20425 3928829..3929215 - 387 WP_000460651.1 hypothetical protein -
C1467_RS20430 3929208..3929528 - 321 WP_000562370.1 antibiotic biosynthesis monooxygenase -

Domains

The domains were predicted by HMMER and were sorted by score.

Orphan Antitoxin


No domain identified.



Sequences

Orphan Antitoxin        


Download         Length:         Molecular weight: 22746.29 Da        Isoelectric Point: 8.6633

>WP_000428546.1 Orphan_TA_94 Antitoxin
MENKNHQQENFKSTYQSLVNSARILFVEKGYQAVSIDEISGKALVTKGAFYHHFKNKKQL
LSACYKQQLIMIDAYITTKTDLTNGWSALESIFEHYLDYIIDNNKNLIPIQEVMPIIGWN
ELEKISLEYITGKVNAIVSKLIQENQLKAYDDDVLKNLLNGWFMHIAIHAKNLKELADKK
GQFIAIYRGFLLSLKDK*

Download         Length: 594 bp

>WP_000428546.1 Orphan_TA_94 Antitoxin
ATGGAAAATAAAAATCATCAACAAGAAAATTTTAAGAGTACCTATCAATCACTGGTTAAC
TCAGCACGAATATTGTTTGTTGAAAAAGGCTATCAAGCTGTTTCAATAGATGAGATCTCG
GGAAAAGCGTTGGTGACCAAAGGTGCCTTTTATCATCACTTTAAAAATAAAAAACAATTA
CTCAGTGCCTGTTATAAGCAGCAATTAATTATGATTGATGCCTACATCACAACAAAAACT
GATTTAACAAATGGTTGGTCTGCCTTAGAAAGTATATTTGAACATTATCTTGATTATATT
ATTGATAATAATAAAAACCTTATCCCTATCCAAGAAGTGATGCCTATCATTGGTTGGAAT
GAACTTGAAAAAATTAGCCTTGAATACATTACTGGTAAGGTAAACGCCATTGTCAGCAAA
TTGATCCAAGAGAACCAACTTAAAGCTTATGATGATGATGTGCTTAAAAACTTACTCAAT
GGCTGGTTTATGCATATCGCAATACATGCGAAAAACCTAAAAGAGCTTGCCGATAAAAAA
GGCCAATTTATTGCTATTTACCGCGGCTTTTTATTGAGCTTGAAAGATAAATAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
AT6245 Mycobacterium tuberculosis H37Rv

32.727

13.547

0.091