TAfinder detailed results
Overview
| Job ID | 9mizKMmBqU | ||
| Sequence name | Escherichia coli strain DH5alpha chromosome, complete genome. | ||
| Predicted type | II | ||
Orphan Antitoxin (Protein)
| Predicted family | - (AT183) | Predicted domain | - |
| Locus tag | C1467_RS20420 | Length | 138 a.a. |
| Coordinates | 3923699..3924115 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1467_RS20355 | 3919661..3920230 | + | 570 | WP_000598300.1 | fimbrial protein | - |
| C1467_RS20360 | 3920242..3920847 | + | 606 | WP_001310526.1 | fimbrial-like protein YadL | - |
| C1467_RS20365 | 3920874..3921470 | + | 597 | WP_000553749.1 | fimbrial-like protein | - |
| C1467_RS20370 | 3921520..3922374 | + | 855 | Protein_3755 | fimbrial tip-adhesin YadC | - |
| C1467_RS20380 | 3922481..3923689 | + | 1209 | WP_001339197.1 | IS4-like element ISVsa5 family transposase | - |
| C1467_RS20385 | 3923699..3924115 | - | 417 | WP_000275180.1 | AraC family transcriptional regulator | Antitoxin |
| C1467_RS20390 | 3924203..3924796 | + | 594 | WP_000428546.1 | tetracyline resistance-associated transcriptional repressor TetC | - |
| C1467_RS20395 | 3924909..3925643 | - | 735 | Protein_3759 | MFS transporter | - |
| C1467_RS20405 | 3925753..3926961 | + | 1209 | WP_001339197.1 | IS4-like element ISVsa5 family transposase | - |
| C1467_RS20410 | 3926973..3927452 | - | 480 | Protein_3761 | MFS transporter | - |
| C1467_RS20415 | 3927534..3928157 | + | 624 | WP_000088605.1 | tetracycline resistance transcriptional repressor TetR(B) | - |
| C1467_RS20420 | 3928135..3928821 | - | 687 | WP_001284954.1 | winged helix-turn-helix domain-containing protein | - |
Domains
The domains were predicted by HMMER and were sorted by score.
Orphan Antitoxin
No domain identified.
Sequences
Orphan Antitoxin
Download Length: Molecular weight: 16774.42 Da Isoelectric Point: 10.4224
>WP_000275180.1 Orphan_TA_93 Antitoxin
MYIEQHSRYQNKANNIQLRYDDKQFHTTVIKDVLLWIEHNLDQSLLLDDVANKAGYTKWY
FQRLFKKVTGVTLASYIRARRLTKAAVELRLTKKTILEIALKYQFDSQQSFTRRFKYIFK
VTPSYYRRNKLWELEAMH*
MYIEQHSRYQNKANNIQLRYDDKQFHTTVIKDVLLWIEHNLDQSLLLDDVANKAGYTKWY
FQRLFKKVTGVTLASYIRARRLTKAAVELRLTKKTILEIALKYQFDSQQSFTRRFKYIFK
VTPSYYRRNKLWELEAMH*
Download Length: 417 bp
>WP_000275180.1 Orphan_TA_93 Antitoxin
TCAGTGCATTGCCTCCAATTCCCATAATTTATTACGCCGATAATAACTTGGTGTAACCTT
AAAAATGTACTTAAATCGACGTGTAAAAGATTGTTGGGAATCAAATTGATATTTTAATGC
GATCTCAAGGATAGTTTTTTTCGTCAACCTCAACTCAACAGCCGCTTTCGTCAAACGACG
AGCACGAATATAGCTAGCCAGTGTGACCCCTGTTACTTTTTTGAACAGCCGCTGAAAATA
CCACTTGGTATAACCCGCTTTATTCGCCACATCATCAAGCAGTAAAGACTGATCTAAATT
ATGTTCAATCCATAATAGAACATCTTTGATAACCGTTGTATGAAACTGCTTATCATCATA
TCTTAATTGGATGTTATTAGCTTTATTTTGATAGCGAGAATGCTGTTCAATATACAT
TCAGTGCATTGCCTCCAATTCCCATAATTTATTACGCCGATAATAACTTGGTGTAACCTT
AAAAATGTACTTAAATCGACGTGTAAAAGATTGTTGGGAATCAAATTGATATTTTAATGC
GATCTCAAGGATAGTTTTTTTCGTCAACCTCAACTCAACAGCCGCTTTCGTCAAACGACG
AGCACGAATATAGCTAGCCAGTGTGACCCCTGTTACTTTTTTGAACAGCCGCTGAAAATA
CCACTTGGTATAACCCGCTTTATTCGCCACATCATCAAGCAGTAAAGACTGATCTAAATT
ATGTTCAATCCATAATAGAACATCTTTGATAACCGTTGTATGAAACTGCTTATCATCATA
TCTTAATTGGATGTTATTAGCTTTATTTTGATAGCGAGAATGCTGTTCAATATACAT
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| AT183 | Pseudomonas aeruginosa PAO1 |
32.099 |
28.521 |
0.187 |