TAfinder detailed results
Overview
| Job ID | 9mizKMmBqU | ||
| Sequence name | Escherichia coli strain DH5alpha chromosome, complete genome. | ||
| Predicted type | II | ||
Orphan Antitoxin (Protein)
| Predicted family | relB (AT10123) | Predicted domain | - |
| Locus tag | C1467_RS02895 | Length | 188 a.a. |
| Coordinates | 544639..545205 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1467_RS02840 | 540409..540900 | - | 492 | WP_000183676.1 | PTS IIA-like nitrogen regulatory protein PtsN | - |
| C1467_RS02845 | 541018..541305 | - | 288 | WP_001176599.1 | ribosome hibernation promoting factor | - |
| C1467_RS02850 | 541328..542761 | - | 1434 | WP_000809051.1 | RNA polymerase factor sigma-54 | - |
| C1467_RS02855 | 542809..543534 | - | 726 | WP_000224099.1 | LPS export ABC transporter ATP-binding protein | - |
| C1467_RS02860 | 543541..544098 | - | 558 | WP_000669785.1 | lipopolysaccharide ABC transporter substrate-binding protein LptA | - |
| C1467_RS02865 | 544067..544642 | - | 576 | WP_000030537.1 | LPS export ABC transporter periplasmic protein LptC | - |
| C1467_RS02870 | 544639..545205 | - | 567 | WP_000030016.1 | 3-deoxy-manno-octulosonate-8-phosphatase KdsC | Antitoxin |
| C1467_RS02875 | 545226..546212 | - | 987 | WP_001295557.1 | arabinose-5-phosphate isomerase KdsD | - |
| C1467_RS02880 | 546226..547203 | - | 978 | WP_000922872.1 | calcium/sodium antiporter | - |
| C1467_RS02885 | 547413..548222 | + | 810 | WP_000438245.1 | phospholipid ABC transporter ATP-binding protein MlaF | - |
| C1467_RS02890 | 548230..549012 | + | 783 | WP_000925795.1 | lipid asymmetry maintenance ABC transporter permease subunit MlaE | - |
| C1467_RS02895 | 549017..549568 | + | 552 | WP_001331181.1 | outer membrane lipid asymmetry maintenance protein MlaD | - |
Domains
The domains were predicted by HMMER and were sorted by score.
Orphan Antitoxin
No domain identified.
Sequences
Orphan Antitoxin
Download Length: Molecular weight: 20015.15 Da Isoelectric Point: 4.7126
>WP_000030016.1 Orphan_TA_8 Antitoxin
MSKAGASLATCYGPVSADVMAKAENIRLLILDVDGVLSDGLIYMGNNGEELKAFNVRDGY
GIRCALTSDIEVAIITGRKAKLVEDRCATLGITHLYQGQSNKLIAFSDLLEKLAIAPENV
AYVGDDLIDWPVMEKVGLSVAVADAHPLLIPRADYVTRIAGGRGAVREVCDLLLLAQGKL
DEAKGQSI*
MSKAGASLATCYGPVSADVMAKAENIRLLILDVDGVLSDGLIYMGNNGEELKAFNVRDGY
GIRCALTSDIEVAIITGRKAKLVEDRCATLGITHLYQGQSNKLIAFSDLLEKLAIAPENV
AYVGDDLIDWPVMEKVGLSVAVADAHPLLIPRADYVTRIAGGRGAVREVCDLLLLAQGKL
DEAKGQSI*
Download Length: 567 bp
>WP_000030016.1 Orphan_TA_8 Antitoxin
TCATATCGATTGCCCTTTGGCTTCATCCAGTTTGCCCTGCGCCAGGAGTAATAAGTCGCA
AACTTCGCGCACTGCGCCACGACCGCCAGCAATGCGCGTCACGTAATCGGCGCGCGGGAT
CAACAGTGGATGCGCATCGGCCACGGCGACGCTTAAACCCACTTTTTCCATTACCGGCCA
GTCGATGAGATCATCGCCGACATAAGCCACATTTTCCGGGGCAATCGCCAGTTTTTCCAG
CAAATCGCTAAAGGCGATCAGTTTGTTTGACTGCCCCTGATACAAGTGAGTGATCCCCAA
TGTGGCACAACGATCTTCTACCAGTTTAGCCTTTCGCCCGGTAATGATAGCGACTTCAAT
ATCAGAGGTGAGCGCACAACGAATGCCATAACCGTCACGAACATTGAACGCTTTCAGCTC
TTCGCCGTTATTGCCCATATAAATCAGGCCATCTGACAGTACGCCATCAACGTCGAGGAT
CAGCAGACGAATGTTCTCTGCTTTTGCCATAACGTCGGCGCTGACAGGGCCGTAACAGGT
CGCAAGCGACGCACCTGCTTTGCTCAT
TCATATCGATTGCCCTTTGGCTTCATCCAGTTTGCCCTGCGCCAGGAGTAATAAGTCGCA
AACTTCGCGCACTGCGCCACGACCGCCAGCAATGCGCGTCACGTAATCGGCGCGCGGGAT
CAACAGTGGATGCGCATCGGCCACGGCGACGCTTAAACCCACTTTTTCCATTACCGGCCA
GTCGATGAGATCATCGCCGACATAAGCCACATTTTCCGGGGCAATCGCCAGTTTTTCCAG
CAAATCGCTAAAGGCGATCAGTTTGTTTGACTGCCCCTGATACAAGTGAGTGATCCCCAA
TGTGGCACAACGATCTTCTACCAGTTTAGCCTTTCGCCCGGTAATGATAGCGACTTCAAT
ATCAGAGGTGAGCGCACAACGAATGCCATAACCGTCACGAACATTGAACGCTTTCAGCTC
TTCGCCGTTATTGCCCATATAAATCAGGCCATCTGACAGTACGCCATCAACGTCGAGGAT
CAGCAGACGAATGTTCTCTGCTTTTGCCATAACGTCGGCGCTGACAGGGCCGTAACAGGT
CGCAAGCGACGCACCTGCTTTGCTCAT
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| AT10123 | Paracoccus phage vB_PkoS_Pkon1 |
51.351 |
32.743 |
0.101 |