TAfinder detailed results

Overview

Job ID 9mizKMmBqU
Sequence name Escherichia coli strain DH5alpha chromosome, complete genome.
Predicted type II

Toxin (Protein)


Predicted family VbhT (T10186) Predicted domain PRK10347 (Fic)
Locus tag C1467_RS02085 Length 200 a.a.
Coordinates 418140..418742 (+)

Antitoxin (Protein)


Predicted family - Predicted domain PF10832 (YhfG)
Locus tag C1467_RS02080 Length 55 a.a.
Coordinates 417983..418150 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
C1467_RS02065 413049..415592 - 2544 WP_000049213.1 NADPH-nitrite reductase large subunit -
C1467_RS02070 415854..417035 - 1182 WP_000185251.1 MFS transporter TsgA -
C1467_RS02075 417306..417878 + 573 WP_000477225.1 peptidylprolyl isomerase A -
C1467_RS02080 417983..418150 + 168 WP_000736860.1 YhfG family protein Antitoxin
C1467_RS02085 418140..418742 + 603 WP_001280624.1 putative adenosine monophosphate-protein transferase Fic Toxin
C1467_RS02090 418774..419337 + 564 WP_000601847.1 aminodeoxychorismate synthase component 2 -
C1467_RS02095 419423..420643 + 1221 WP_000963797.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
C1467_RS02100 420710..422800 - 2091 WP_001295162.1 YccS/YhfK family putative transporter -
C1467_RS02105 422851..423483 - 633 WP_000242755.1 cAMP-activated global transcriptional regulator CRP -

Domains

The domains were predicted by HMMER and were sorted by score.

Toxin

PRK10347 (Fic) (E-value: 1.7e-123, Score:407.9)

(1-200)

PF02661 (Fic) (E-value: 0.0015, Score:15.9)

(240-311)

Antitoxin

PF10832 (YhfG) (E-value: 1.1e-38, Score:129.1)

(2-55)

PRK10204 (E-value: 4.9e-35, Score:117.2)

(1-55)


Sequences

Toxin        


Download         Length: 200 a.a.        Molecular weight: 22940.98 Da        Isoelectric Point: 4.9406

>WP_001280624.1 TA_8 Toxin
MSDKFGEGRDPYLYPGLDIMRNRLNIHQQQRLEQAAYEMTALRAATIELGPLVRGLPHLR
TIHRQLYQDIFDWAGQLREVDIYQGDTPFCHFAYIEKEGNALMQDLEEEGYLVGLEKAKF
VERLAHYYCEINVLHPFRVGSGLAQRIFFEQLAIHAGYQLSWQGIEKEAWNQANQSGAMG
DLTALQMIFSKVVSEAGESE*

Download         Length: 603 bp

>WP_001280624.1 TA_8 Toxin
ATGAGCGATAAATTCGGCGAAGGGCGCGATCCGTATCTTTATCCTGGCCTTGATATCATG
CGTAACCGGCTGAACATCCACCAGCAGCAGCGGCTGGAACAGGCCGCTTACGAAATGACG
GCGCTGCGTGCTGCGACCATTGAGCTTGGTCCGCTGGTGCGCGGTTTACCGCATTTGCGC
ACTATCCATCGCCAGCTGTATCAGGATATTTTCGACTGGGCGGGGCAACTGCGTGAAGTT
GATATTTATCAGGGTGATACGCCGTTCTGCCACTTTGCTTATATCGAAAAAGAGGGCAAT
GCCCTGATGCAGGATCTGGAGGAAGAAGGTTATCTGGTTGGCCTGGAGAAAGCGAAGTTC
GTCGAGCGGCTGGCGCATTACTATTGTGAAATCAACGTGCTGCATCCCTTCCGGGTGGGA
AGTGGTCTGGCACAGCGGATCTTCTTCGAGCAACTGGCGATTCATGCCGGATATCAACTG
AGCTGGCAGGGTATCGAAAAAGAGGCCTGGAATCAGGCAAATCAGAGTGGGGCAATGGGG
GATCTCACCGCACTGCAGATGATATTTAGCAAAGTGGTAAGCGAAGCCGGGGAATCTGAG
TAA

Antitoxin


Download         Length: 55 a.a.        Molecular weight: 6635.66 Da        Isoelectric Point: 11.1273

>WP_000736860.1 TA_8 Antitoxin
VKKLTDKQKSRLWELQRNRNFQASRRLEGVEMPLVTLTAAEALARLEELRRHYER*

Download         Length: 168 bp

>WP_000736860.1 TA_8 Antitoxin
GTGAAGAAACTCACCGATAAGCAAAAGTCCCGTCTCTGGGAGCTTCAGCGTAATCGTAAT
TTCCAGGCCAGTCGCCGTCTTGAAGGCGTCGAGATGCCTTTAGTCACTCTTACTGCCGCA
GAGGCTTTAGCGCGCCTTGAAGAGCTGAGGAGGCACTATGAGCGATAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
T10186 Bartonella schoenbuchensis R1

33.673

41.004

0.328
T10184 Campylobacter fetus subsp. venerealis str. 84-112

34.483

65.022

0.249
T10048 Mycoplasma mycoides subsp. capri str. GM12

33.981

55.08

0.174
Protein Organism Identities (%) Coverage (%) Ha-value