TAfinder detailed results
Overview
| Job ID | 9mizKMmBqU | ||
| Sequence name | Escherichia coli strain DH5alpha chromosome, complete genome. | ||
| Predicted type | II | ||
Orphan Toxin (Protein)
| Predicted family | mazF (T6252) | Predicted domain | - |
| Locus tag | C1467_RS17580 | Length | 155 a.a. |
| Coordinates | 3363006..3363473 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1467_RS17540 | 3359535..3360116 | + | 582 | WP_001269673.1 | LPS assembly lipoprotein LptE | - |
| C1467_RS17545 | 3360116..3361147 | + | 1032 | WP_000620532.1 | DNA polymerase III subunit delta | - |
| C1467_RS17550 | 3361149..3361790 | + | 642 | WP_000838889.1 | nicotinate-nucleotide adenylyltransferase | - |
| C1467_RS17555 | 3361814..3362425 | + | 612 | WP_001241899.1 | adenosylcobalamin/alpha-ribazole phosphatase | - |
| C1467_RS17560 | 3362685..3363002 | + | 318 | WP_001161664.1 | ribosome silencing factor | - |
| C1467_RS17565 | 3363006..3363473 | + | 468 | WP_000776104.1 | 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH | Toxin |
| C1467_RS17570 | 3363504..3365405 | + | 1902 | WP_000776191.1 | peptidoglycan DD-transpeptidase MrdA | - |
| C1467_RS17575 | 3365408..3366520 | + | 1113 | WP_000131719.1 | peptidoglycan glycosyltransferase MrdB | - |
| C1467_RS17580 | 3366531..3367619 | + | 1089 | WP_001231415.1 | endolytic peptidoglycan transglycosylase RlpA | - |
Domains
The domains were predicted by HMMER and were sorted by score.
Orphan Toxin
No domain identified.
Sequences
Orphan Toxin
Download Length: Molecular weight: 17309.05 Da Isoelectric Point: 8.9138
>WP_000776104.1 Orphan_TA_78 Toxin
VKLQLVAVGTKMPDWVQTGFTEYLRRFPKDMPFELIEIPAGKRGKNADIKRILDKEGEQM
LAAAGKNRIVTLDIPGKPWDTPQLAAELERWKLDGRDVSLLIGGPEGLSPACKAAAEQSW
SLSALTLPHPLVRVLVAESLYRAWSITTNHPYHRE*
VKLQLVAVGTKMPDWVQTGFTEYLRRFPKDMPFELIEIPAGKRGKNADIKRILDKEGEQM
LAAAGKNRIVTLDIPGKPWDTPQLAAELERWKLDGRDVSLLIGGPEGLSPACKAAAEQSW
SLSALTLPHPLVRVLVAESLYRAWSITTNHPYHRE*
Download Length: 468 bp
>WP_000776104.1 Orphan_TA_78 Toxin
GTGAAGCTGCAACTTGTCGCCGTGGGAACGAAAATGCCGGACTGGGTACAAACCGGTTTT
ACCGAGTACCTGCGTCGTTTTCCGAAAGATATGCCCTTCGAGCTGATTGAAATTCCGGCC
GGAAAACGCGGCAAGAATGCGGACATCAAGCGCATACTCGACAAAGAGGGTGAGCAGATG
TTGGCGGCCGCAGGCAAAAACCGCATTGTCACCCTCGATATTCCAGGCAAGCCCTGGGAT
ACACCGCAGTTAGCCGCTGAGCTGGAACGCTGGAAGCTGGATGGTCGCGACGTCAGTCTA
CTGATTGGCGGGCCTGAAGGGTTGTCGCCTGCCTGTAAAGCGGCGGCGGAGCAGAGCTGG
TCGCTGTCGGCGCTTACCCTCCCCCATCCGCTGGTTCGCGTGCTGGTCGCAGAGAGTCTG
TACCGGGCGTGGAGCATCACCACCAACCATCCTTATCACCGTGAGTGA
GTGAAGCTGCAACTTGTCGCCGTGGGAACGAAAATGCCGGACTGGGTACAAACCGGTTTT
ACCGAGTACCTGCGTCGTTTTCCGAAAGATATGCCCTTCGAGCTGATTGAAATTCCGGCC
GGAAAACGCGGCAAGAATGCGGACATCAAGCGCATACTCGACAAAGAGGGTGAGCAGATG
TTGGCGGCCGCAGGCAAAAACCGCATTGTCACCCTCGATATTCCAGGCAAGCCCTGGGAT
ACACCGCAGTTAGCCGCTGAGCTGGAACGCTGGAAGCTGGATGGTCGCGACGTCAGTCTA
CTGATTGGCGGGCCTGAAGGGTTGTCGCCTGCCTGTAAAGCGGCGGCGGAGCAGAGCTGG
TCGCTGTCGGCGCTTACCCTCCCCCATCCGCTGGTTCGCGTGCTGGTCGCAGAGAGTCTG
TACCGGGCGTGGAGCATCACCACCAACCATCCTTATCACCGTGAGTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| T6252 | Mycobacterium tuberculosis H37Rv |
43.59 |
33.051 |
0.109 |