TAfinder detailed results

Overview

Job ID 9mizKMmBqU
Sequence name Escherichia coli strain DH5alpha chromosome, complete genome.
Predicted type II

Orphan Antitoxin (Protein)


Predicted family vapB (AT4250) Predicted domain PF01402 (RHH)
Locus tag C1467_RS17330 Length 97 a.a.
Coordinates 3317836..3318129 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
C1467_RS17285 3313161..3314480 + 1320 WP_000075845.1 putrescine-ornithine antiporter -
C1467_RS17290 3314536..3316176 - 1641 WP_001295675.1 phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) -
C1467_RS17295 3316202..3316747 - 546 WP_001349977.1 replication initiation negative regulator SeqA -
C1467_RS17300 3316932..3317696 + 765 WP_000773302.1 esterase -
C1467_RS17305 3317836..3318129 + 294 WP_001300829.1 LexA regulated protein Antitoxin
C1467_RS17310 3318269..3318799 + 531 WP_001018618.1 flavodoxin FldA -
C1467_RS17315 3319009..3319095 + 87 WP_001406816.1 fur leader peptide -
C1467_RS17320 3319088..3319534 + 447 WP_000131702.1 ferric iron uptake transcriptional regulator -
C1467_RS17325 3319618..3319944 - 327 WP_000733579.1 ChiQ/YbfN family lipoprotein -
C1467_RS17330 3319994..3321400 - 1407 WP_001258839.1 chitoporin -

Domains

The domains were predicted by HMMER and were sorted by score.

Orphan Antitoxin


No domain identified.



Sequences

Orphan Antitoxin        


Download         Length:         Molecular weight: 11279.98 Da        Isoelectric Point: 10.8531

>WP_001300829.1 Orphan_TA_77 Antitoxin
MAKEQTDRTTLDLFAHERRPGRPKTNPLSRDEQLRINKRNQLKRDKVRGLKRVELKLNAE
AVEALNELAESRNMSRSELIEEMLMQQLAALRSQGIV*

Download         Length: 294 bp

>WP_001300829.1 Orphan_TA_77 Antitoxin
ATGGCCAAAGAACAAACGGACCGTACGACATTAGATCTGTTCGCGCACGAGCGTCGACCG
GGACGACCGAAAACTAATCCGCTTTCGCGCGATGAACAGCTGCGTATTAATAAACGCAAC
CAGCTAAAACGCGACAAAGTACGTGGCCTTAAGCGTGTCGAACTGAAGCTGAACGCGGAA
GCTGTCGAGGCGCTGAACGAGCTGGCGGAATCGCGCAATATGAGCCGTAGCGAACTGATC
GAAGAGATGTTAATGCAGCAACTGGCGGCGCTGCGTAGTCAGGGCATCGTTTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
AT4250 Klebsiella pneumoniae subsp. pneumoniae MGH 78578

34.146

51.25

0.143
AT94 Mycobacterium tuberculosis H37Rv

37.143

41.176

0.133