TAfinder detailed results
Overview
| Job ID | 9mizKMmBqU | ||
| Sequence name | Escherichia coli strain DH5alpha chromosome, complete genome. | ||
| Predicted type | II | ||
Orphan Antitoxin (Protein)
| Predicted family | - (AT611) | Predicted domain | PF08220 (HTH_DeoR) |
| Locus tag | C1467_RS16500 | Length | 252 a.a. |
| Coordinates | 3147901..3148659 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1467_RS16455 | 3143296..3144504 | + | 1209 | WP_000217848.1 | MFS transporter | - |
| C1467_RS16460 | 3144504..3145319 | + | 816 | WP_001297001.1 | 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase | - |
| C1467_RS16465 | 3145405..3145689 | + | 285 | WP_000480893.1 | protein YbjH | - |
| C1467_RS16470 | 3145730..3146962 | - | 1233 | WP_001180076.1 | multidrug efflux MFS transporter MdfA | - |
| C1467_RS16475 | 3147247..3147843 | + | 597 | WP_000892317.1 | undecaprenyl-diphosphate phosphatase | - |
| C1467_RS16480 | 3147901..3148659 | + | 759 | WP_000450133.1 | DNA-binding transcriptional repressor DeoR | Antitoxin |
| C1467_RS16485 | 3148706..3149908 | - | 1203 | WP_000195961.1 | serine-type D-Ala-D-Ala carboxypeptidase | - |
| C1467_RS16490 | 3150155..3150781 | + | 627 | WP_001295292.1 | glutathione S-transferase GstB | - |
| C1467_RS16495 | 3150778..3151893 | - | 1116 | WP_000555030.1 | aldose sugar dehydrogenase YliI | - |
| C1467_RS16500 | 3152004..3152387 | - | 384 | WP_000497137.1 | biofilm formation regulator BssR | - |
Domains
The domains were predicted by HMMER and were sorted by score.
Orphan Antitoxin
No domain identified.
Sequences
Orphan Antitoxin
Download Length: Molecular weight: 28575.03 Da Isoelectric Point: 7.6637
>WP_000450133.1 Orphan_TA_73 Antitoxin
METRREERIGQLLQELKRSDKLHLKDAAALLGVSEMTIRRDLNNHSAPVVLLGGYIVLEP
RSASHYLLSDQKSRLVEEKRRAAKMAATLVEPDQTLFFDCGTTTPWIIEAIDNEIPFTAV
CYSLNTFLALKEKPHCRAFLCGGEFHASNAIFKPIDFQQTLNNFCPDIAFYSAAGVHVSK
GATCFNLEELPVKHWAMSMAQKHVLVVDHSKFGKVRPARMGDLKRFDIVVSDCCPEDEYV
KYAQTHRIKLMY*
METRREERIGQLLQELKRSDKLHLKDAAALLGVSEMTIRRDLNNHSAPVVLLGGYIVLEP
RSASHYLLSDQKSRLVEEKRRAAKMAATLVEPDQTLFFDCGTTTPWIIEAIDNEIPFTAV
CYSLNTFLALKEKPHCRAFLCGGEFHASNAIFKPIDFQQTLNNFCPDIAFYSAAGVHVSK
GATCFNLEELPVKHWAMSMAQKHVLVVDHSKFGKVRPARMGDLKRFDIVVSDCCPEDEYV
KYAQTHRIKLMY*
Download Length: 759 bp
>WP_000450133.1 Orphan_TA_73 Antitoxin
ATGGAAACACGTCGCGAAGAGCGTATCGGGCAGCTGCTGCAAGAATTAAAACGCAGCGAT
AAGTTACATCTTAAAGACGCCGCCGCCCTGCTTGGGGTTTCGGAGATGACGATTCGTCGC
GATCTGAACAACCACAGTGCGCCCGTCGTTTTGCTCGGCGGCTATATTGTTCTGGAACCG
CGCAGTGCCAGCCATTACCTGTTAAGCGATCAAAAATCCCGCCTGGTGGAAGAAAAACGC
CGGGCGGCAAAAATGGCTGCGACACTGGTAGAACCCGATCAGACTCTCTTTTTTGACTGT
GGCACCACCACGCCGTGGATTATTGAAGCGATTGATAATGAAATCCCTTTTACCGCCGTT
TGTTATTCGCTAAATACCTTTCTGGCGCTGAAAGAGAAACCCCATTGCCGCGCATTTCTG
TGCGGTGGTGAATTTCACGCCAGCAACGCCATTTTCAAACCCATCGATTTTCAGCAAACG
TTGAATAATTTTTGCCCGGATATCGCTTTTTATTCCGCGGCGGGCGTGCATGTCAGTAAA
GGCGCTACCTGTTTTAATCTTGAAGAGTTGCCGGTAAAACACTGGGCCATGTCGATGGCG
CAAAAGCATGTGCTGGTTGTCGACCACAGTAAATTTGGCAAGGTGCGTCCGGCGCGCATG
GGTGACCTGAAACGCTTTGATATTGTGGTGAGTGATTGTTGCCCGGAAGATGAGTATGTG
AAGTACGCGCAGACGCACCGTATTAAGTTGATGTATTAA
ATGGAAACACGTCGCGAAGAGCGTATCGGGCAGCTGCTGCAAGAATTAAAACGCAGCGAT
AAGTTACATCTTAAAGACGCCGCCGCCCTGCTTGGGGTTTCGGAGATGACGATTCGTCGC
GATCTGAACAACCACAGTGCGCCCGTCGTTTTGCTCGGCGGCTATATTGTTCTGGAACCG
CGCAGTGCCAGCCATTACCTGTTAAGCGATCAAAAATCCCGCCTGGTGGAAGAAAAACGC
CGGGCGGCAAAAATGGCTGCGACACTGGTAGAACCCGATCAGACTCTCTTTTTTGACTGT
GGCACCACCACGCCGTGGATTATTGAAGCGATTGATAATGAAATCCCTTTTACCGCCGTT
TGTTATTCGCTAAATACCTTTCTGGCGCTGAAAGAGAAACCCCATTGCCGCGCATTTCTG
TGCGGTGGTGAATTTCACGCCAGCAACGCCATTTTCAAACCCATCGATTTTCAGCAAACG
TTGAATAATTTTTGCCCGGATATCGCTTTTTATTCCGCGGCGGGCGTGCATGTCAGTAAA
GGCGCTACCTGTTTTAATCTTGAAGAGTTGCCGGTAAAACACTGGGCCATGTCGATGGCG
CAAAAGCATGTGCTGGTTGTCGACCACAGTAAATTTGGCAAGGTGCGTCCGGCGCGCATG
GGTGACCTGAAACGCTTTGATATTGTGGTGAGTGATTGTTGCCCGGAAGATGAGTATGTG
AAGTACGCGCAGACGCACCGTATTAAGTTGATGTATTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| AT611 | Staphylococcus aureus subsp. aureus MW2 |
34.375 |
29.907 |
0.043 |