TAfinder detailed results
Overview
| Job ID | 9mizKMmBqU | ||
| Sequence name | Escherichia coli strain DH5alpha chromosome, complete genome. | ||
| Predicted type | II | ||
Orphan Antitoxin (Protein)
| Predicted family | vagC (AT10197) | Predicted domain | - |
| Locus tag | C1467_RS16200 | Length | 158 a.a. |
| Coordinates | 3100629..3101105 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1467_RS16145 | 3096133..3096978 | - | 846 | WP_001061657.1 | putrescine ABC transporter permease PotI | - |
| C1467_RS16150 | 3096975..3097928 | - | 954 | WP_001093858.1 | putrescine ABC transporter permease PotH | - |
| C1467_RS16155 | 3097938..3099071 | - | 1134 | WP_000996018.1 | putrescine ABC transporter ATP-binding subunit PotG | - |
| C1467_RS16160 | 3099166..3100278 | - | 1113 | WP_000126084.1 | spermidine/putrescine ABC transporter substrate-binding protein PotF | - |
| C1467_RS16170 | 3100629..3101105 | - | 477 | WP_000203025.1 | YbjN domain-containing protein | Antitoxin |
| C1467_RS16175 | 3101193..3102095 | - | 903 | WP_000684321.1 | 30S ribosomal protein S6--L-glutamate ligase | - |
| C1467_RS16180 | 3102156..3102878 | - | 723 | WP_000189121.1 | nitroreductase NfsA | - |
| C1467_RS16185 | 3102862..3103149 | - | 288 | WP_001201560.1 | DUF1418 family protein | - |
| C1467_RS16190 | 3103309..3103566 | + | 258 | WP_001195240.1 | glutaredoxin 1 | - |
| C1467_RS16195 | 3103596..3103973 | - | 378 | WP_000681108.1 | inner membrane protein YbjM | - |
| C1467_RS16200 | 3104243..3105928 | + | 1686 | WP_001024876.1 | aspartate:alanine antiporter | - |
Domains
The domains were predicted by HMMER and were sorted by score.
Orphan Antitoxin
No domain identified.
Sequences
Orphan Antitoxin
Download Length: Molecular weight: 17666.10 Da Isoelectric Point: 3.9175
>WP_000203025.1 Orphan_TA_72 Antitoxin
MTSLVVPGLDTLRQWLDDLGMSFFECDNCQALHLPHMQNFDGVFDAKIDLIDNTILFSAM
AEVRPSAVLPLAADLSAINASSLTVKAFLDMQDDNLPKLVVCQSLSVMQGVTYEQFAWFV
RQSEEQISMVILEANAHQLLLPTDDEGQNNVTENYFLH*
MTSLVVPGLDTLRQWLDDLGMSFFECDNCQALHLPHMQNFDGVFDAKIDLIDNTILFSAM
AEVRPSAVLPLAADLSAINASSLTVKAFLDMQDDNLPKLVVCQSLSVMQGVTYEQFAWFV
RQSEEQISMVILEANAHQLLLPTDDEGQNNVTENYFLH*
Download Length: 477 bp
>WP_000203025.1 Orphan_TA_72 Antitoxin
TCAGTGGAGGAAATAGTTTTCGGTAACGTTGTTTTGCCCTTCATCATCAGTCGGTAACAG
CAGTTGATGGGCATTAGCTTCAAGAATGACCATCGAAATCTGCTCTTCGCTCTGACGCAC
GAACCATGCAAACTGCTCATAGGTTACGCCCTGCATAACGGATAAAGACTGGCAAACCAC
CAGCTTTGGCAGATTATCATCCTGCATATCAAGAAATGCTTTCACGGTCAGCGAACTGGC
ATTGATGGCAGATAAATCCGCCGCCAGCGGCAATACGGCTGAAGGTCGGACTTCCGCCAT
GGCAGAAAACAGGATCGTGTTATCGATCAGATCGATTTTGGCATCAAAGACACCGTCGAA
ATTCTGCATATGGGGCAGATGCAGAGCCTGACAGTTATCACATTCAAAAAAACTCATCCC
CAGGTCATCGAGCCATTGACGCAGCGTATCCAGACCAGGAACGACCAGCGATGTCAT
TCAGTGGAGGAAATAGTTTTCGGTAACGTTGTTTTGCCCTTCATCATCAGTCGGTAACAG
CAGTTGATGGGCATTAGCTTCAAGAATGACCATCGAAATCTGCTCTTCGCTCTGACGCAC
GAACCATGCAAACTGCTCATAGGTTACGCCCTGCATAACGGATAAAGACTGGCAAACCAC
CAGCTTTGGCAGATTATCATCCTGCATATCAAGAAATGCTTTCACGGTCAGCGAACTGGC
ATTGATGGCAGATAAATCCGCCGCCAGCGGCAATACGGCTGAAGGTCGGACTTCCGCCAT
GGCAGAAAACAGGATCGTGTTATCGATCAGATCGATTTTGGCATCAAAGACACCGTCGAA
ATTCTGCATATGGGGCAGATGCAGAGCCTGACAGTTATCACATTCAAAAAAACTCATCCC
CAGGTCATCGAGCCATTGACGCAGCGTATCCAGACCAGGAACGACCAGCGATGTCAT
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| AT10197 | Klebsiella pneumoniae |
32.609 |
60.526 |
0.094 |