TAfinder detailed results
Overview
| Job ID | 9mizKMmBqU | ||
| Sequence name | Escherichia coli strain DH5alpha chromosome, complete genome. | ||
| Predicted type | II | ||
Orphan Toxin (Protein)
| Predicted family | - (T6098) | Predicted domain | - |
| Locus tag | C1467_RS15935 | Length | 196 a.a. |
| Coordinates | 3043751..3044341 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1467_RS15900 | 3039543..3040400 | + | 858 | WP_000642546.1 | formate transporter FocA | - |
| C1467_RS15905 | 3040455..3042737 | + | 2283 | WP_001292814.1 | formate C-acetyltransferase | - |
| C1467_RS15910 | 3042929..3043669 | + | 741 | WP_000111043.1 | pyruvate formate lyase 1-activating protein | - |
| C1467_RS15915 | 3043751..3044341 | - | 591 | WP_001190375.1 | NAD(P)H oxidoreductase | Toxin |
| C1467_RS15920 | 3044441..3045349 | + | 909 | WP_001242678.1 | LysR family transcriptional regulator | - |
| C1467_RS15925 | 3045350..3046780 | - | 1431 | WP_000918501.1 | amino acid permease | - |
| C1467_RS15930 | 3046990..3048138 | - | 1149 | WP_000109295.1 | MFS transporter | - |
| C1467_RS15935 | 3048453..3049079 | + | 627 | WP_000165876.1 | isochorismate family cysteine hydrolase YcaC | - |
Domains
The domains were predicted by HMMER and were sorted by score.
Orphan Toxin
No domain identified.
Sequences
Orphan Toxin
Download Length: Molecular weight: 23026.11 Da Isoelectric Point: 5.0723
>WP_001190375.1 Orphan_TA_71 Toxin
MQSERIYLVWAHPRHDSLTAHIADAIHQRAMERKIQVTELDLYRRNFNPVMTSEDEPDWK
NMDKRYSPEVHQLYSELLEHDTLVVVFPLWWYSFPAMLKGYIDRVWNNGLAYGDGHKLPF
NKVRWVALVGGDKESFVQMGWEKNISDYLKNMCSYLGIEDADVTFLCNTVVFDGEELHAS
YYQSLLSQVRDMVDAL*
MQSERIYLVWAHPRHDSLTAHIADAIHQRAMERKIQVTELDLYRRNFNPVMTSEDEPDWK
NMDKRYSPEVHQLYSELLEHDTLVVVFPLWWYSFPAMLKGYIDRVWNNGLAYGDGHKLPF
NKVRWVALVGGDKESFVQMGWEKNISDYLKNMCSYLGIEDADVTFLCNTVVFDGEELHAS
YYQSLLSQVRDMVDAL*
Download Length: 591 bp
>WP_001190375.1 Orphan_TA_71 Toxin
TTATAGTGCATCTACCATATCCCGTACCTGAGATAATAACGACTGATAATAGCTCGCGTG
AAGTTCTTCCCCATCGAATACCACTGTATTACACAAGAAAGTGACATCGGCATCTTCAAT
ACCAAGATAACTGCACATATTTTTTAAATAATCGCTTATATTTTTTTCCCAGCCCATCTG
GACAAATGATTCTTTGTCTCCTCCAACCAGCGCCACCCAACGAACTTTATTGAATGGTAA
TTTGTGCCCATCTCCATAAGCCAGCCCATTATTCCATACTCTGTCAATATATCCTTTTAG
CATTGCCGGGAAGCTGTACCACCAGAGAGGAAAAACCACCACTAACGTGTCATGCTCAAG
CAGCTCTGAATAAAGCTGATGAACCTCTGGAGAATAACGTTTATCCATATTCTTCCAGTC
TGGTTCATCTTCCGACGTCATCACCGGGTTGAAATTACGCCGATATAAATCGAGTTCCGT
CACCTGTATTTTCCGCTCCATTGCCCGCTGATGGATCGCATCAGCAATATGTGCGGTCAA
TGAATCATGACGAGGATGGGCCCATACCAAATAAATACGTTCAGACTGCAT
TTATAGTGCATCTACCATATCCCGTACCTGAGATAATAACGACTGATAATAGCTCGCGTG
AAGTTCTTCCCCATCGAATACCACTGTATTACACAAGAAAGTGACATCGGCATCTTCAAT
ACCAAGATAACTGCACATATTTTTTAAATAATCGCTTATATTTTTTTCCCAGCCCATCTG
GACAAATGATTCTTTGTCTCCTCCAACCAGCGCCACCCAACGAACTTTATTGAATGGTAA
TTTGTGCCCATCTCCATAAGCCAGCCCATTATTCCATACTCTGTCAATATATCCTTTTAG
CATTGCCGGGAAGCTGTACCACCAGAGAGGAAAAACCACCACTAACGTGTCATGCTCAAG
CAGCTCTGAATAAAGCTGATGAACCTCTGGAGAATAACGTTTATCCATATTCTTCCAGTC
TGGTTCATCTTCCGACGTCATCACCGGGTTGAAATTACGCCGATATAAATCGAGTTCCGT
CACCTGTATTTTCCGCTCCATTGCCCGCTGATGGATCGCATCAGCAATATGTGCGGTCAA
TGAATCATGACGAGGATGGGCCCATACCAAATAAATACGTTCAGACTGCAT
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| T6098 | Sinorhizobium meliloti 1021 |
43.75 |
17.391 |
0.071 |