TAfinder detailed results
Overview
| Job ID | 9mizKMmBqU | ||
| Sequence name | Escherichia coli strain DH5alpha chromosome, complete genome. | ||
| Predicted type | II | ||
Orphan Antitoxin (Protein)
| Predicted family | vapB (AT6245) | Predicted domain | PF00440 (TetR_N) |
| Locus tag | C1467_RS02560 | Length | 220 a.a. |
| Coordinates | 481040..481702 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1467_RS02520 | 476368..479472 | - | 3105 | WP_001273212.1 | multidrug efflux RND transporter permease subunit AcrF | - |
| C1467_RS02525 | 479484..480641 | - | 1158 | WP_000160334.1 | multidrug efflux RND transporter periplasmic adaptor subunit AcrE | - |
| C1467_RS02535 | 481040..481702 | + | 663 | WP_001129522.1 | multidrug efflux transporter transcriptional repressor AcrS | Antitoxin |
| C1467_RS02540 | 481705..481884 | - | 180 | WP_001295275.1 | DUF2556 family protein | - |
| C1467_RS02545 | 481968..482852 | - | 885 | WP_001258900.1 | adenine-specific DNA-methyltransferase | - |
| C1467_RS02550 | 482938..483234 | - | 297 | WP_000462905.1 | DNA-binding transcriptional regulator Fis | - |
| C1467_RS02555 | 483260..484225 | - | 966 | WP_001219652.1 | tRNA dihydrouridine synthase DusB | - |
| C1467_RS02560 | 484554..485435 | - | 882 | WP_001145827.1 | 50S ribosomal protein L11 methyltransferase | - |
Domains
The domains were predicted by HMMER and were sorted by score.
Orphan Antitoxin
No domain identified.
Sequences
Orphan Antitoxin
Download Length: Molecular weight: 25197.18 Da Isoelectric Point: 6.2293
>WP_001129522.1 Orphan_TA_7 Antitoxin
MAKRTKAEALKTRQELIETAIAQFAQHGVSKTTLNDIADAANVTRGAIYWHFENKTQLFN
EMWLQQPSLRELIQEHLTAGLEHDPFQQLREKLIVGLQYIAKIPRQQALLKILYHKCEFN
DEMLAEGVIREKMGFNPQTLREVLQACQQQGCVANNLDLDVVMIIINGAFSGIVQNWLMN
MAGYDLYKQAPALVDNVLRMFMPDENITKLIHQTNELSVM*
MAKRTKAEALKTRQELIETAIAQFAQHGVSKTTLNDIADAANVTRGAIYWHFENKTQLFN
EMWLQQPSLRELIQEHLTAGLEHDPFQQLREKLIVGLQYIAKIPRQQALLKILYHKCEFN
DEMLAEGVIREKMGFNPQTLREVLQACQQQGCVANNLDLDVVMIIINGAFSGIVQNWLMN
MAGYDLYKQAPALVDNVLRMFMPDENITKLIHQTNELSVM*
Download Length: 663 bp
>WP_001129522.1 Orphan_TA_7 Antitoxin
ATGGCAAAAAGAACCAAAGCCGAAGCTCTGAAGACCCGGCAAGAACTGATTGAAACTGCC
ATCGCCCAGTTTGCGCAGCATGGCGTAAGCAAGACGACACTCAACGACATTGCCGACGCT
GCTAACGTTACGCGTGGCGCTATCTACTGGCACTTCGAAAACAAGACTCAACTGTTTAAT
GAGATGTGGTTGCAACAGCCTTCATTGCGGGAGTTAATCCAGGAACACTTGACGGCTGGA
TTAGAGCATGACCCGTTTCAACAATTGCGTGAAAAATTGATTGTCGGCTTGCAATATATT
GCCAAAATTCCCCGCCAGCAGGCGTTGCTGAAAATCTTATATCACAAATGTGAATTTAAT
GATGAGATGCTGGCCGAGGGAGTGATACGCGAAAAGATGGGCTTCAATCCGCAGACTCTC
CGCGAAGTATTGCAGGCGTGTCAGCAACAAGGTTGTGTAGCAAATAACCTCGATTTAGAT
GTTGTGATGATTATTATTAATGGTGCCTTCAGCGGAATTGTTCAAAACTGGTTAATGAAT
ATGGCGGGTTATGATCTTTATAAACAAGCCCCCGCTCTGGTCGATAACGTATTAAGAATG
TTCATGCCAGATGAAAACATAACGAAATTAATTCATCAAACGAATGAATTAAGTGTCATG
TAA
ATGGCAAAAAGAACCAAAGCCGAAGCTCTGAAGACCCGGCAAGAACTGATTGAAACTGCC
ATCGCCCAGTTTGCGCAGCATGGCGTAAGCAAGACGACACTCAACGACATTGCCGACGCT
GCTAACGTTACGCGTGGCGCTATCTACTGGCACTTCGAAAACAAGACTCAACTGTTTAAT
GAGATGTGGTTGCAACAGCCTTCATTGCGGGAGTTAATCCAGGAACACTTGACGGCTGGA
TTAGAGCATGACCCGTTTCAACAATTGCGTGAAAAATTGATTGTCGGCTTGCAATATATT
GCCAAAATTCCCCGCCAGCAGGCGTTGCTGAAAATCTTATATCACAAATGTGAATTTAAT
GATGAGATGCTGGCCGAGGGAGTGATACGCGAAAAGATGGGCTTCAATCCGCAGACTCTC
CGCGAAGTATTGCAGGCGTGTCAGCAACAAGGTTGTGTAGCAAATAACCTCGATTTAGAT
GTTGTGATGATTATTATTAATGGTGCCTTCAGCGGAATTGTTCAAAACTGGTTAATGAAT
ATGGCGGGTTATGATCTTTATAAACAAGCCCCCGCTCTGGTCGATAACGTATTAAGAATG
TTCATGCCAGATGAAAACATAACGAAATTAATTCATCAAACGAATGAATTAAGTGTCATG
TAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| AT6245 | Mycobacterium tuberculosis H37Rv |
36.735 |
12.069 |
0.081 |