TAfinder detailed results

Overview

Job ID 9mizKMmBqU
Sequence name Escherichia coli strain DH5alpha chromosome, complete genome.
Predicted type II

Toxin (Protein)


Predicted family higB (T6088) Predicted domain RelE
Locus tag C1467_RS01860 Length 105 a.a.
Coordinates 374859..375176 (-)

Antitoxin (Protein)


Predicted family higA (AT303) Predicted domain PRK10072 (HTH)
Locus tag C1467_RS01855 Length 98 a.a.
Coordinates 374504..374800 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
C1467_RS01835 371700..372176 - 477 WP_000856744.1 transcription elongation factor GreB -
C1467_RS01845 372404..373123 + 720 WP_001157751.1 two-component system response regulator OmpR -
C1467_RS01850 373120..374472 + 1353 WP_001253696.1 two-component system sensor histidine kinase EnvZ -
C1467_RS01855 374504..374800 - 297 WP_000650976.1 NadS family protein Antitoxin
C1467_RS01860 374859..375176 - 318 WP_000493756.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
C1467_RS01865 375293..376915 - 1623 WP_001265681.1 phosphoenolpyruvate carboxykinase (ATP) -
C1467_RS01875 377294..379018 + 1725 WP_000370819.1 DUF4153 domain-containing protein -
C1467_RS01880 379081..379959 - 879 WP_001135574.1 Hsp33 family molecular chaperone HslO -

Domains

The domains were predicted by HMMER and were sorted by score.

Toxin

RelE (E-value: 1.9e-07, Score:29.3)

(36-100)

Antitoxin

PRK10072 (HTH) (E-value: 8.4e-18, Score:62.7)

(4-95)

TIGR03070 (couple_hipB) (E-value: 0.00056, Score:17.2)

(228-258)

PF13560 (HTH_31) (E-value: 0.0088, Score:13.3)

(23-65)

MqsA_antitoxin (MqsA) (E-value: 0.022, Score:13)

(71-130)

cd00093 (Xre) (E-value: 0.016, Score:12.6)

(29-99)

TIGR03070 (couple_hipB) (E-value: 250, Score:-1.4)

(251-268)


Sequences

Toxin        


Download         Length: 105 a.a.        Molecular weight: 12266.21 Da        Isoelectric Point: 10.2614

>WP_000493756.1 TA_7 Toxin
MFTFIELQGFSKRRQLLLPDDEFRAFQELLIQDPTAGDIIAGTGSFRKIRWNRSGMGKRG
GIRIIYYNVTRNGRIYLALIYPKNEQDDLTEEQRKALKLLSEKLL*

Download         Length: 318 bp

>WP_000493756.1 TA_7 Toxin
TTAAAGCAGCTTCTCTGACAATAGTTTCAATGCCTTTCTTTGTTCTTCTGTTAAATCATC
CTGTTCATTTTTAGGATAAATCAACGCCAGATAAATTCGGCCATTGCGTGTTACGTTGTA
ATAAATTATCCGAATGCCACCCCGTTTCCCCATTCCAGAACGGTTCCAGCGAATTTTTCT
AAAACTGCCTGTGCCTGCGATAATGTCACCGGCAGTGGGATCTTGAATGAGTAGTTCCTG
AAAAGCCCGGAACTCATCATCAGGTAACAATAACTGGCGGCGTTTGCTAAATCCTTGTAG
TTCAATAAAGGTGAACAT

Antitoxin


Download         Length: 98 a.a.        Molecular weight: 11117.78 Da        Isoelectric Point: 5.1891

>WP_000650976.1 TA_7 Antitoxin
MKDELFADLLASAEEMVRIEKGEETPEPEHVHTFSEIDVKAIREATGLRQQDFAVAVGVS
YDLVKSWETKRRQPTGAPRKLLLLLQANPFIINQLKTI*

Download         Length: 297 bp

>WP_000650976.1 TA_7 Antitoxin
TTAGATTGTTTTCAATTGATTGATAATGAAAGGATTCGCTTGCAAAAGCAGGAGCAATTT
TCGAGGTGCTCCGGTAGGCTGACGGCGTTTGGTTTCCCAGCTTTTGACCAGGTCATAACT
TACCCCTACGGCGACAGCAAAATCTTGCTGACGTAAACCCGTTGCTTCACGGATCGCTTT
TACATCGATCTCGCTAAAAGTATGGACGTGCTCTGGTTCAGGCGTTTCTTCACCCTTTTC
GATGCGTACCATTTCTTCTGCGCTGGCAAGAAGATCAGCAAATAATTCATCTTTCAT

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
T6088 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2

43

97.087

0.406
T174 Vibrio cholerae O1 biovar El Tor str. N16961

49

90.909

0.462
T303 Pseudomonas putida KT2440

43.434

95.192

0.406
T978 Synechocystis sp. PCC 6803

38.235

56.667

0.245
Protein Organism Identities (%) Coverage (%) Ha-value
AT303 Pseudomonas putida KT2440

38.889

94.737

0.354
AT6088 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2

37.313

79.762

0.253
AT174 Vibrio cholerae O1 biovar El Tor str. N16961

26.804

93.269

0.263
AT1005 Escherichia coli O157:H7 str. Sakai

30.769

47.706

0.162