TAfinder detailed results
Overview
| Job ID | 9mizKMmBqU | ||
| Sequence name | Escherichia coli strain DH5alpha chromosome, complete genome. | ||
| Predicted type | II | ||
Orphan Antitoxin (Protein)
| Predicted family | - (AT3484) | Predicted domain | - |
| Locus tag | C1467_RS14900 | Length | 173 a.a. |
| Coordinates | 2845790..2846311 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1467_RS14860 | 2841254..2841490 | - | 237 | WP_000103754.1 | acyl carrier protein | - |
| C1467_RS14865 | 2841701..2842435 | - | 735 | WP_001008535.1 | 3-oxoacyl-ACP reductase FabG | - |
| C1467_RS14870 | 2842448..2843377 | - | 930 | WP_000191372.1 | ACP S-malonyltransferase | - |
| C1467_RS14875 | 2843393..2844346 | - | 954 | WP_000288132.1 | beta-ketoacyl-ACP synthase III | - |
| C1467_RS14880 | 2844414..2845484 | - | 1071 | WP_000197578.1 | phosphate acyltransferase PlsX | - |
| C1467_RS14885 | 2845565..2845738 | - | 174 | WP_000290727.1 | 50S ribosomal protein L32 | - |
| C1467_RS14890 | 2845790..2846311 | - | 522 | WP_001174481.1 | 23S rRNA accumulation protein YceD | Antitoxin |
| C1467_RS14895 | 2846510..2847094 | + | 585 | WP_001125202.1 | 7-methyl-GTP pyrophosphatase | - |
| C1467_RS14900 | 2847206..2848165 | - | 960 | WP_000846343.1 | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | - |
Domains
The domains were predicted by HMMER and were sorted by score.
Orphan Antitoxin
No domain identified.
Sequences
Orphan Antitoxin
Download Length: Molecular weight: 19314.91 Da Isoelectric Point: 4.1771
>WP_001174481.1 Orphan_TA_68 Antitoxin
MQKVKLPLTLDPVRTAQKRLDYQGIYTPDQVERVAESVVSVDSDVECSMSFAIDNQRLAV
LNGDAKVTVTLECQRCGKPFTHQVYTTYCFSPVRSDEQAEALPEAYEPIEVNEFGEIDLL
AMVEDEIILALPVVPVHDSEHCEVSEADMVFGELPEEAQKPNPFAVLASLKRK*
MQKVKLPLTLDPVRTAQKRLDYQGIYTPDQVERVAESVVSVDSDVECSMSFAIDNQRLAV
LNGDAKVTVTLECQRCGKPFTHQVYTTYCFSPVRSDEQAEALPEAYEPIEVNEFGEIDLL
AMVEDEIILALPVVPVHDSEHCEVSEADMVFGELPEEAQKPNPFAVLASLKRK*
Download Length: 522 bp
>WP_001174481.1 Orphan_TA_68 Antitoxin
TTACTTACGCTTTAAGCTGGCTAATACGGCAAATGGGTTTGGCTTTTGCGCTTCTTCAGG
CAGTTCACCAAAGACCATGTCCGCTTCGGACACTTCACAGTGTTCAGAATCATGCACCGG
AACTACCGGCAAGGCGAGGATGATTTCATCTTCAACCATTGCAAGCAGATCGATTTCACC
GAATTCGTTAACCTCAATCGGTTCATACGCTTCCGGCAGTGCTTCAGCCTGTTCGTCTGA
ACGCACAGGACTAAAACAATACGTTGTGTAGACCTGATGAGTAAACGGCTTCCCGCAACG
CTGACACTCGAGCGTTACCGTCACCTTCGCATCGCCGTTTAACACTGCGAGACGTTGGTT
ATCGATAGCGAACGACATGGAGCATTCCACATCACTGTCCACACTGACTACGGATTCGGC
GACGCGCTCAACCTGATCAGGGGTATAGATACCCTGGTAATCAAGGCGTTTTTGAGCCGT
ACGAACCGGATCGAGAGTCAGGGGTAATTTTACCTTTTGCAT
TTACTTACGCTTTAAGCTGGCTAATACGGCAAATGGGTTTGGCTTTTGCGCTTCTTCAGG
CAGTTCACCAAAGACCATGTCCGCTTCGGACACTTCACAGTGTTCAGAATCATGCACCGG
AACTACCGGCAAGGCGAGGATGATTTCATCTTCAACCATTGCAAGCAGATCGATTTCACC
GAATTCGTTAACCTCAATCGGTTCATACGCTTCCGGCAGTGCTTCAGCCTGTTCGTCTGA
ACGCACAGGACTAAAACAATACGTTGTGTAGACCTGATGAGTAAACGGCTTCCCGCAACG
CTGACACTCGAGCGTTACCGTCACCTTCGCATCGCCGTTTAACACTGCGAGACGTTGGTT
ATCGATAGCGAACGACATGGAGCATTCCACATCACTGTCCACACTGACTACGGATTCGGC
GACGCGCTCAACCTGATCAGGGGTATAGATACCCTGGTAATCAAGGCGTTTTTGAGCCGT
ACGAACCGGATCGAGAGTCAGGGGTAATTTTACCTTTTGCAT
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| AT3484 | Yersinia enterocolitica subsp. enterocolitica 8081 |
34.286 |
23.649 |
0.069 |