TAfinder detailed results
Overview
| Job ID | 9mizKMmBqU | ||
| Sequence name | Escherichia coli strain DH5alpha chromosome, complete genome. | ||
| Predicted type | II | ||
Orphan Antitoxin (Protein)
| Predicted family | mbcA (AT106) | Predicted domain | PF12844 (HTH_19) |
| Locus tag | C1467_RS13535 | Length | 139 a.a. |
| Coordinates | 2590830..2591249 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1467_RS13465 | 2585921..2587048 | - | 1128 | WP_000228824.1 | DUF262 domain-containing protein | - |
| C1467_RS13470 | 2587232..2587654 | - | 423 | WP_001151237.1 | DUF977 family protein | - |
| C1467_RS13475 | 2587670..2588431 | - | 762 | WP_000450660.1 | DUF1627 domain-containing protein | - |
| C1467_RS13480 | 2588454..2589200 | - | 747 | WP_000788973.1 | ATP-binding protein | - |
| C1467_RS13485 | 2589207..2590064 | - | 858 | WP_000899746.1 | YdaU family protein | - |
| C1467_RS13490 | 2590077..2590499 | - | 423 | WP_000693802.1 | toxin YdaT family protein | - |
| C1467_RS13495 | 2590496..2590750 | - | 255 | WP_001072342.1 | hypothetical protein | - |
| C1467_RS13500 | 2590830..2591249 | + | 420 | WP_000233319.1 | helix-turn-helix domain-containing protein | Antitoxin |
| C1467_RS25565 | 2591535..2591669 | + | 135 | WP_000233813.1 | hypothetical protein | - |
| C1467_RS13515 | 2591680..2591832 | + | 153 | WP_001169153.1 | DUF1391 family protein | - |
| C1467_RS13520 | 2592253..2592474 | + | 222 | WP_000560220.1 | killing protein KilR | - |
| C1467_RS13525 | 2592474..2592644 | + | 171 | WP_001349883.1 | YdaE family protein | - |
| C1467_RS13530 | 2592719..2592994 | + | 276 | WP_001349884.1 | hypothetical protein | - |
| C1467_RS13535 | 2593096..2595696 | + | 2601 | WP_000105152.1 | exodeoxyribonuclease VIII | - |
Domains
The domains were predicted by HMMER and were sorted by score.
Orphan Antitoxin
No domain identified.
Sequences
Orphan Antitoxin
Download Length: Molecular weight: 16179.44 Da Isoelectric Point: 8.0006
>WP_000233319.1 Orphan_TA_62 Antitoxin
MVHEDKARKEFASRLALACENAGYEQHGRQAEIARRMKLTPKAVSKWFNGETIPRREKLR
ELATLIGTTPTYLLGEDTEESGQIRFYQELNPRQKIIIDLLDELPDSETDELLKTLEEKK
QKYNAIYEELARKKKQKAS*
MVHEDKARKEFASRLALACENAGYEQHGRQAEIARRMKLTPKAVSKWFNGETIPRREKLR
ELATLIGTTPTYLLGEDTEESGQIRFYQELNPRQKIIIDLLDELPDSETDELLKTLEEKK
QKYNAIYEELARKKKQKAS*
Download Length: 420 bp
>WP_000233319.1 Orphan_TA_62 Antitoxin
ATGGTTCATGAAGATAAAGCGCGTAAAGAGTTCGCCAGTAGGCTTGCGCTAGCCTGTGAA
AACGCTGGTTATGAACAACATGGAAGGCAGGCAGAAATTGCCCGTCGAATGAAATTAACA
CCAAAAGCGGTTAGCAAATGGTTTAATGGTGAAACAATTCCTCGCCGAGAGAAATTAAGG
GAATTAGCAACACTCATTGGAACAACACCAACCTATCTTTTGGGAGAGGATACAGAAGAA
AGTGGACAGATACGTTTCTATCAGGAGTTAAATCCAAGACAAAAAATCATCATTGACCTT
CTGGACGAGCTCCCTGACAGTGAGACAGATGAACTTTTAAAAACTCTTGAGGAGAAAAAA
CAGAAGTACAATGCAATTTACGAAGAGTTAGCACGAAAGAAAAAACAAAAAGCCTCTTAA
ATGGTTCATGAAGATAAAGCGCGTAAAGAGTTCGCCAGTAGGCTTGCGCTAGCCTGTGAA
AACGCTGGTTATGAACAACATGGAAGGCAGGCAGAAATTGCCCGTCGAATGAAATTAACA
CCAAAAGCGGTTAGCAAATGGTTTAATGGTGAAACAATTCCTCGCCGAGAGAAATTAAGG
GAATTAGCAACACTCATTGGAACAACACCAACCTATCTTTTGGGAGAGGATACAGAAGAA
AGTGGACAGATACGTTTCTATCAGGAGTTAAATCCAAGACAAAAAATCATCATTGACCTT
CTGGACGAGCTCCCTGACAGTGAGACAGATGAACTTTTAAAAACTCTTGAGGAGAAAAAA
CAGAAGTACAATGCAATTTACGAAGAGTTAGCACGAAAGAAAAAACAAAAAGCCTCTTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| AT106 | Mycobacterium tuberculosis H37Rv |
31.034 |
51.327 |
0.129 |