TAfinder detailed results

Overview

Job ID 9mizKMmBqU
Sequence name Escherichia coli strain DH5alpha chromosome, complete genome.
Predicted type II

Toxin (Protein)


Predicted family ataT (T200) Predicted domain COG2153 (ElaA)
Locus tag C1467_RS01545 Length 175 a.a.
Coordinates 307787..308314 (+)

Antitoxin (Protein)


Predicted family ataR (AT200) Predicted domain COG4453 (DUF1778)
Locus tag C1467_RS01540 Length 88 a.a.
Coordinates 307514..307780 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
C1467_RS01520 303172..303840 + 669 WP_000617723.1 cell division ATP-binding protein FtsE -
C1467_RS01525 303833..304891 + 1059 WP_001042003.1 permease-like cell division protein FtsX -
C1467_RS01530 305136..305990 + 855 WP_000130217.1 RNA polymerase sigma factor RpoH -
C1467_RS01535 306261..307364 + 1104 WP_001021996.1 branched chain amino acid ABC transporter substrate-binding protein LivJ -
C1467_RS01540 307514..307780 + 267 WP_001277108.1 type II toxin-antitoxin system antitoxin AtaR Antitoxin
C1467_RS01545 307787..308314 + 528 WP_000342449.1 type II toxin-antitoxin system toxin acetyltransferase AtaT Toxin
C1467_RS01550 308311..308694 - 384 WP_000778781.1 aspartate 1-decarboxylase autocleavage activator PanM -
C1467_RS01555 309118..310227 + 1110 WP_000827696.1 high-affinity branched-chain amino acid ABC transporter substrate-binding protein LivK -
C1467_RS01560 310275..311201 + 927 WP_000003004.1 high-affinity branched-chain amino acid ABC transporter permease LivH -
C1467_RS01565 311198..312475 + 1278 WP_000803798.1 branched chain amino acid ABC transporter permease LivM -
C1467_RS01570 312472..313239 + 768 WP_000082110.1 high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG -

Domains

The domains were predicted by HMMER and were sorted by score.

Toxin

COG2153 (ElaA) (E-value: 1e-04, Score:20.2)

(75-134)

PRK10514 (E-value: 0.0055, Score:14.5)

(68-122)

PF13508 (Acetyltransf_7) (E-value: 0.0081, Score:13.1)

(65-110)

PF00583 (GNAT) (E-value: 0.015, Score:12.7)

(101-153)

COG1246 (ArgA) (E-value: 0.02, Score:11.7)

(358-407)

Antitoxin

COG4453 (DUF1778) (E-value: 2.6e-31, Score:106.6)

(65-150)

PF08681 (DUF1778) (E-value: 1.3e-18, Score:65)

(9-87)

PF01402 (RHH) (E-value: 0.00022, Score:19.4)

(9-62)


Sequences

Toxin        


Download         Length: 175 a.a.        Molecular weight: 19691.70 Da        Isoelectric Point: 7.7457

>WP_000342449.1 TA_6 Toxin
MDDLTIEILTDDADYDLQRFDCGEEALNLFLTTHLVRQHRNKILRAYILCRNTPERQVLG
YYTLCGSCFERAALPSKSKQKKIPYKNIPSVTLGRLAIDRSLQGQGWGATLVAHAMKVVW
SASLAVGIHGLFVEALNKKAHTFYQSLGFIPLVGENENALFFPTKSIELLFTQSD*

Download         Length: 528 bp

>WP_000342449.1 TA_6 Toxin
ATGGATGATCTGACGATAGAGATTCTGACCGATGATGCAGATTATGATCTACAGCGATTC
GACTGCGGCGAGGAAGCGTTAAATCTCTTTCTGACGACACATCTCGTTCGTCAACATCGC
AACAAAATTCTGCGAGCGTATATCCTTTGTCGCAACACTCCAGAACGTCAGGTGCTGGGA
TATTACACATTATGCGGCAGTTGTTTTGAACGAGCCGCATTGCCCTCGAAATCGAAACAG
AAAAAAATTCCCTACAAAAATATTCCCAGCGTTACTCTTGGGCGTCTGGCAATTGATCGT
TCATTACAGGGGCAGGGATGGGGAGCAACACTGGTTGCTCATGCCATGAAAGTCGTCTGG
TCAGCCTCTTTAGCGGTAGGTATTCACGGTCTTTTTGTCGAGGCGCTGAATAAAAAAGCC
CATACGTTTTATCAATCGCTGGGCTTTATCCCGTTGGTCGGAGAAAACGAAAATGCGTTA
TTTTTCCCAACCAAATCCATCGAACTGCTTTTCACACAGAGCGATTAA

Antitoxin


Download         Length: 88 a.a.        Molecular weight: 9910.31 Da        Isoelectric Point: 10.0863

>WP_001277108.1 TA_6 Antitoxin
MSAVKKQRIDLRLTDDDKSMIEEAAAISNQSVSQFMLNSASQRAAEVIEQHRRVILNEES
WTRVMDALSNPPSPGEKLKRAAKRLQGM*

Download         Length: 267 bp

>WP_001277108.1 TA_6 Antitoxin
ATGTCTGCTGTTAAAAAGCAGCGTATCGATCTGCGTTTAACTGACGATGACAAAAGTATG
ATTGAGGAAGCGGCAGCGATATCTAATCAGTCCGTCAGCCAATTTATGTTGAACAGCGCT
TCGCAGCGGGCTGCGGAAGTGATTGAACAGCATCGGCGGGTGATCCTCAATGAGGAATCC
TGGACGCGGGTGATGGATGCGCTGAGTAATCCACCGTCACCTGGTGAAAAGCTAAAACGT
GCGGCAAAACGTCTTCAGGGAATGTAA

Similar Proteins

Only experimentally validated proteins are listed.