TAfinder detailed results
Overview
| Job ID | 9mizKMmBqU | ||
| Sequence name | Escherichia coli strain DH5alpha chromosome, complete genome. | ||
| Predicted type | II | ||
Orphan Antitoxin (Protein)
| Predicted family | relB (AT10123) | Predicted domain | PF13443 (HTH_26) |
| Locus tag | C1467_RS12980 | Length | 178 a.a. |
| Coordinates | 2486497..2487033 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1467_RS12930 | 2481796..2483202 | - | 1407 | WP_000760589.1 | PLP-dependent aminotransferase family protein | - |
| C1467_RS12935 | 2483281..2483697 | - | 417 | WP_001270285.1 | type II toxin-antitoxin system antitoxin HicB | - |
| C1467_RS12940 | 2483743..2483919 | - | 177 | WP_000813794.1 | type II toxin-antitoxin system mRNA interferase toxin HicA | - |
| C1467_RS12945 | 2484141..2484371 | + | 231 | WP_000494244.1 | YncJ family protein | - |
| C1467_RS12950 | 2484463..2486424 | - | 1962 | WP_001301045.1 | 23S rRNA 5-hydroxycytidine C2501 synthase | - |
| C1467_RS12955 | 2486497..2487033 | - | 537 | WP_000429155.1 | DNA-binding transcriptional regulator SutR | Antitoxin |
| C1467_RS12960 | 2487086..2488300 | + | 1215 | WP_001326689.1 | BenE family transporter YdcO | - |
| C1467_RS12965 | 2488340..2489548 | - | 1209 | WP_000826403.1 | RNA-guided endonuclease TnpB family protein | - |
| C1467_RS12970 | 2489556..2490057 | + | 501 | Protein_2391 | IS200/IS605 family transposase | - |
| C1467_RS12975 | 2490075..2490743 | - | 669 | WP_001261013.1 | DUF3313 domain-containing protein | - |
| C1467_RS12980 | 2491046..2491639 | - | 594 | WP_000586720.1 | tellurite resistance methyltransferase TehB | - |
Domains
The domains were predicted by HMMER and were sorted by score.
Orphan Antitoxin
No domain identified.
Sequences
Orphan Antitoxin
Download Length: Molecular weight: 19731.30 Da Isoelectric Point: 6.1280
>WP_000429155.1 Orphan_TA_56 Antitoxin
MENLARFLSTTLKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLN
VPFSTFISPPQSATPSVYDPQQQAMVITSLFPYDPQLCFEHFSIQMASGAISESTPHEKG
VIEHVVVIDGQLDLCVDGEWQTLNCGEGVRFAADVTHIYRNGGEQTVHFHSLIHYPRS*
MENLARFLSTTLKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLN
VPFSTFISPPQSATPSVYDPQQQAMVITSLFPYDPQLCFEHFSIQMASGAISESTPHEKG
VIEHVVVIDGQLDLCVDGEWQTLNCGEGVRFAADVTHIYRNGGEQTVHFHSLIHYPRS*
Download Length: 537 bp
>WP_000429155.1 Orphan_TA_56 Antitoxin
TTAACTGCGCGGGTAATGGATGAGGGAATGAAAATGTACGGTTTGCTCCCCACCATTACG
ATAGATATGCGTGACGTCTGCAGCAAATCGAACGCCTTCCCCACAATTAAGGGTCTGCCA
TTCCCCATCAACGCACAGATCAAGTTGTCCATCAATGACGACGACATGTTCGATTACCCC
CTTCTCATGGGGCGTCGATTCGCTTATTGCACCAGATGCCATCTGAATCGAGAAGTGTTC
GAAGCAGAGTTGTGGATCATAAGGAAACAGCGAAGTGATCACCATCGCCTGCTGTTGTGG
ATCATAAACTGAAGGCGTAGCGGACTGCGGCGGAGAAATAAATGTTGAAAATGGTACGTT
CAACCCGGTGGCAATTTTCCATAATGTCGCGACCGTCGGACTGGACTCATTACGCTCAAT
CTGCCCTAACATTGCTTTAGAAACGCCCGTCGCTTCTGCCAGTCGCGAAAGACTCCAGCC
GCGCTGCTGGCGTAGTTGTTTAAGTGTGGTGGATAAAAAGCGAGCGAGATTTTCCAT
TTAACTGCGCGGGTAATGGATGAGGGAATGAAAATGTACGGTTTGCTCCCCACCATTACG
ATAGATATGCGTGACGTCTGCAGCAAATCGAACGCCTTCCCCACAATTAAGGGTCTGCCA
TTCCCCATCAACGCACAGATCAAGTTGTCCATCAATGACGACGACATGTTCGATTACCCC
CTTCTCATGGGGCGTCGATTCGCTTATTGCACCAGATGCCATCTGAATCGAGAAGTGTTC
GAAGCAGAGTTGTGGATCATAAGGAAACAGCGAAGTGATCACCATCGCCTGCTGTTGTGG
ATCATAAACTGAAGGCGTAGCGGACTGCGGCGGAGAAATAAATGTTGAAAATGGTACGTT
CAACCCGGTGGCAATTTTCCATAATGTCGCGACCGTCGGACTGGACTCATTACGCTCAAT
CTGCCCTAACATTGCTTTAGAAACGCCCGTCGCTTCTGCCAGTCGCGAAAGACTCCAGCC
GCGCTGCTGGCGTAGTTGTTTAAGTGTGGTGGATAAAAAGCGAGCGAGATTTTCCAT
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| AT10195 | Escherichia coli strain BL21 (TaKaRa) |
29.73 |
84.091 |
0.123 |
| AT1040 | Escherichia coli str. K-12 substr. MG1655 |
29.73 |
84.091 |
0.123 |
| AT10098 | Escherichia coli Nissle 1917 |
28.378 |
84.091 |
0.117 |
| AT10123 | Paracoccus phage vB_PkoS_Pkon1 |
32.143 |
49.558 |
0.101 |
| AT1067 | Haemophilus influenzae Rd KW20 |
34.694 |
50 |
0.095 |
| AT325 | Streptococcus pneumoniae TIGR4 |
30 |
51.546 |
0.084 |
| AT1005 | Escherichia coli O157:H7 str. Sakai |
40.541 |
33.945 |
0.084 |
| AT611 | Staphylococcus aureus subsp. aureus MW2 |
30 |
46.729 |
0.084 |