TAfinder detailed results

Overview

Job ID 9mizKMmBqU
Sequence name Escherichia coli strain DH5alpha chromosome, complete genome.
Predicted type II

Orphan Antitoxin (Protein)


Predicted family hipB (AT10195) Predicted domain PRK09726 (HipB)
Locus tag C1467_RS12550 Length 88 a.a.
Coordinates 2393040..2393306 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
C1467_RS12520 2393040..2393306 + 267 WP_001296726.1 type II toxin-antitoxin system antitoxin HipB Antitoxin
C1467_RS12525 2393306..2394628 + 1323 WP_001125454.1 type II toxin-antitoxin system serine/threonine protein kinase toxin HipA -
C1467_RS12535 2394940..2395148 + 207 Protein_2310 AraC family transcriptional regulator -
C1467_RS12545 2395580..2396143 + 564 WP_001296758.1 type 1 fimbrial major subunit FimA -
C1467_RS12550 2396504..2397214 + 711 WP_001195166.1 fimbria/pilus periplasmic chaperone -

Domains

The domains were predicted by HMMER and were sorted by score.

Orphan Antitoxin


No domain identified.



Sequences

Orphan Antitoxin        


Download         Length:         Molecular weight: 10047.39 Da        Isoelectric Point: 4.9632

>WP_001296726.1 Orphan_TA_52 Antitoxin
MMSFQKIYSPTQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENNPDNTTLTTFFKI
LQSLELSMTLCDTKNASPESTEQQDLEW*

Download         Length: 267 bp

>WP_001296726.1 Orphan_TA_52 Antitoxin
ATGATGAGCTTTCAGAAGATCTATAGCCCAACGCAATTAGCGAATGCAATGAAACTGGTT
CGCCAGCAAAATGGCTGGACGCAGAGCGAGCTGGCGAAAAAAATTGGCATTAAGCAGGCG
ACAATTTCCAATTTCGAAAACAACCCTGACAATACCACGCTCACGACATTTTTTAAGATT
TTACAGTCGCTTGAACTCTCAATGACACTATGCGACACGAAAAATGCCTCGCCAGAATCA
ACAGAACAGCAAGATCTGGAGTGGTAA

Similar Proteins

Only experimentally validated proteins are listed.