TAfinder detailed results
Overview
| Job ID | 9mizKMmBqU | ||
| Sequence name | Escherichia coli strain DH5alpha chromosome, complete genome. | ||
| Predicted type | II | ||
Orphan Antitoxin (Protein)
| Predicted family | - (AT183) | Predicted domain | - |
| Locus tag | C1467_RS01250 | Length | 242 a.a. |
| Coordinates | 247069..247797 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1467_RS01215 | 242499..243896 | + | 1398 | WP_000784821.1 | cytochrome c peroxidase | - |
| C1467_RS01220 | 244107..245507 | + | 1401 | WP_000372240.1 | glutamate decarboxylase | - |
| C1467_RS01225 | 245877..246701 | + | 825 | WP_001191068.1 | acid resistance transcriptional activator GadX | - |
| C1467_RS01230 | 247069..247797 | + | 729 | WP_000149991.1 | acid resistance transcriptional activator GadW | Antitoxin |
| C1467_RS01240 | 248160..251273 | - | 3114 | WP_000024892.1 | multidrug efflux pump RND permease MdtF | - |
| C1467_RS01245 | 251298..252455 | - | 1158 | WP_001081984.1 | multidrug transporter subunit MdtE | - |
| C1467_RS01250 | 252515..252793 | + | 279 | WP_001205329.1 | hypothetical protein | - |
Domains
The domains were predicted by HMMER and were sorted by score.
Orphan Antitoxin
No domain identified.
Sequences
Orphan Antitoxin
Download Length: Molecular weight: 28023.43 Da Isoelectric Point: 8.7004
>WP_000149991.1 Orphan_TA_5 Antitoxin
MTHVCSVILIRRSFDIYHEQHKISLHNESIVLLEKNLADDFAFCSPDTRRLDIDELTVCH
YLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMF
SHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCF
SKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSPGT
FS*
MTHVCSVILIRRSFDIYHEQHKISLHNESIVLLEKNLADDFAFCSPDTRRLDIDELTVCH
YLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMF
SHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCF
SKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSPGT
FS*
Download Length: 729 bp
>WP_000149991.1 Orphan_TA_5 Antitoxin
ATGACTCATGTCTGCTCGGTGATCCTCATTCGTCGTTCATTCGATATTTATCATGAACAG
CATAAAATATCGCTGCATAACGAGAGTATCGTGCTGCTGGAGAAAAATTTGGCAGACGAT
TTTGCGTTTTGTTCACCGGATACGCGACGACTGGATATCGATGAGCTGACAGTTTGCCAT
TACTTACAAAATATTCGTCAGCTACCACGCAATTTAGGGTTACATAGCAAAGACCGTCTA
TTAATTAACCAGTCACCCCCCATGCCGCTGGTGACGGCGATTTTTGATAGCTTCAATGAA
TCCGGGGTAAATTCACCGATACTGAGCAATATGCTCTACCTTTCCTGTTTATCGATGTTT
TCTCATAAGAAAGAACTGATCCCCTTACTTTTCAATAGCATCAGCACTGTTTCAGGAAAA
GTTGAACGCCTTATTAGCTTTGATATCGCCAAACGTTGGTATCTGCGCGATATCGCGGAA
AGAATGTATACCAGCGAGAGTCTCATCAAAAAAAAGTTGCAGGATGAAAATACCTGTTTC
AGTAAAATATTACTCGCTTCCAGGATGTCGATGGCCAGACGATTACTCGAGTTACGTCAA
ATTCCTCTGCATACTATTGCAGAAAAATGTGGCTATAGCAGTACGTCGTACTTTATAAAC
ACATTTCGACAATATTATGGTGTAACGCCACATCAGTTTGCGCAACATTCGCCAGGTACC
TTTTCCTGA
ATGACTCATGTCTGCTCGGTGATCCTCATTCGTCGTTCATTCGATATTTATCATGAACAG
CATAAAATATCGCTGCATAACGAGAGTATCGTGCTGCTGGAGAAAAATTTGGCAGACGAT
TTTGCGTTTTGTTCACCGGATACGCGACGACTGGATATCGATGAGCTGACAGTTTGCCAT
TACTTACAAAATATTCGTCAGCTACCACGCAATTTAGGGTTACATAGCAAAGACCGTCTA
TTAATTAACCAGTCACCCCCCATGCCGCTGGTGACGGCGATTTTTGATAGCTTCAATGAA
TCCGGGGTAAATTCACCGATACTGAGCAATATGCTCTACCTTTCCTGTTTATCGATGTTT
TCTCATAAGAAAGAACTGATCCCCTTACTTTTCAATAGCATCAGCACTGTTTCAGGAAAA
GTTGAACGCCTTATTAGCTTTGATATCGCCAAACGTTGGTATCTGCGCGATATCGCGGAA
AGAATGTATACCAGCGAGAGTCTCATCAAAAAAAAGTTGCAGGATGAAAATACCTGTTTC
AGTAAAATATTACTCGCTTCCAGGATGTCGATGGCCAGACGATTACTCGAGTTACGTCAA
ATTCCTCTGCATACTATTGCAGAAAAATGTGGCTATAGCAGTACGTCGTACTTTATAAAC
ACATTTCGACAATATTATGGTGTAACGCCACATCAGTTTGCGCAACATTCGCCAGGTACC
TTTTCCTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| AT183 | Pseudomonas aeruginosa PAO1 |
34.783 |
16.197 |
0.066 |