TAfinder detailed results
Overview
| Job ID | 9mizKMmBqU | ||
| Sequence name | Escherichia coli strain DH5alpha chromosome, complete genome. | ||
| Predicted type | II | ||
Orphan Antitoxin (Protein)
| Predicted family | vapB (AT6245) | Predicted domain | PF00440 (TetR_N) |
| Locus tag | C1467_RS11590 | Length | 199 a.a. |
| Coordinates | 2224778..2225377 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1467_RS11545 | 2222406..2223053 | - | 648 | WP_001282281.1 | ribonuclease T | - |
| C1467_RS11550 | 2223156..2223563 | - | 408 | WP_001237797.1 | lactoylglutathione lyase | - |
| C1467_RS11555 | 2223644..2224741 | - | 1098 | WP_000093582.1 | N-ethylmaleimide reductase | - |
| C1467_RS11560 | 2224778..2225377 | - | 600 | WP_001032936.1 | DNA-binding transcriptional regulator NemR | Antitoxin |
| C1467_RS11565 | 2225480..2225719 | + | 240 | WP_000840481.1 | DUF1289 domain-containing protein | - |
| C1467_RS11570 | 2225768..2226664 | + | 897 | WP_000250661.1 | aldo/keto reductase family oxidoreductase | - |
| C1467_RS11575 | 2226745..2227266 | + | 522 | WP_001349914.1 | superoxide dismutase [Cu-Zn] SodC | - |
| C1467_RS11580 | 2227267..2229279 | - | 2013 | WP_000994280.1 | FUSC family protein | - |
| C1467_RS11585 | 2229279..2230136 | - | 858 | WP_014640609.1 | HlyD family secretion protein | - |
| C1467_RS11590 | 2230139..2230375 | - | 237 | WP_000670998.1 | DUF1656 domain-containing protein | - |
Domains
The domains were predicted by HMMER and were sorted by score.
Orphan Antitoxin
No domain identified.
Sequences
Orphan Antitoxin
Download Length: Molecular weight: 22275.37 Da Isoelectric Point: 6.9485
>WP_001032936.1 Orphan_TA_42 Antitoxin
MNKHTEHDTREHLLATGEQLCLQRGFTGMGLSELLKTAEVPKGSFYHYFRSKEAFGVAML
ERHYAAYHQRLTELLQSGEGNYRDRILAYYQQTLNQFCQHGTISGCLTVKLSAEVCDLSE
DMRSAMDKGARGVIALLSQALENGRENHCLTFCGEPLQQAQVLYALWLGANLQAKISRSF
EPLENALAHVKNIIATPAV*
MNKHTEHDTREHLLATGEQLCLQRGFTGMGLSELLKTAEVPKGSFYHYFRSKEAFGVAML
ERHYAAYHQRLTELLQSGEGNYRDRILAYYQQTLNQFCQHGTISGCLTVKLSAEVCDLSE
DMRSAMDKGARGVIALLSQALENGRENHCLTFCGEPLQQAQVLYALWLGANLQAKISRSF
EPLENALAHVKNIIATPAV*
Download Length: 600 bp
>WP_001032936.1 Orphan_TA_42 Antitoxin
CTAAACGGCAGGCGTCGCAATAATGTTTTTTACATGGGCCAGCGCGTTTTCCAGTGGCTC
GAAACTGCGCGAAATTTTGGCCTGCAGATTCGCACCCAGCCATAGTGCGTAAAGCACTTG
TGCCTGTTGTAGCGGTTCGCCACAAAAGGTTAAACAATGGTTCTCACGGCCATTTTCCAG
CGCCTGAGAGAGCAGGGCGATCACGCCGCGAGCACCTTTATCCATCGCGCTGCGCATATC
TTCTGACAGATCGCACACTTCGGCAGAGAGTTTTACTGTCAGGCAACCACTGATGGTTCC
ATGTTGGCAAAACTGGTTCAGTGTTTGCTGGTAATAAGCCAGTATGCGGTCGCGGTAGTT
ACCTTCGCCGGATTGCAGCAACTCAGTCAGTCGCTGGTGATATGCGGCGTAATGACGCTC
AAGCATGGCAACGCCAAACGCTTCTTTAGAGCGAAAGTAGTGATAGAAGGACCCTTTCGG
CACTTCAGCGGTTTTTAGTAATTCGCTTAGCCCCATCCCGGTGAATCCACGTTGCAGGCA
AAGTTGCTCGCCCGTCGCCAGGAGATGTTCGCGAGTATCATGTTCGGTGTGTTTGTTCAT
CTAAACGGCAGGCGTCGCAATAATGTTTTTTACATGGGCCAGCGCGTTTTCCAGTGGCTC
GAAACTGCGCGAAATTTTGGCCTGCAGATTCGCACCCAGCCATAGTGCGTAAAGCACTTG
TGCCTGTTGTAGCGGTTCGCCACAAAAGGTTAAACAATGGTTCTCACGGCCATTTTCCAG
CGCCTGAGAGAGCAGGGCGATCACGCCGCGAGCACCTTTATCCATCGCGCTGCGCATATC
TTCTGACAGATCGCACACTTCGGCAGAGAGTTTTACTGTCAGGCAACCACTGATGGTTCC
ATGTTGGCAAAACTGGTTCAGTGTTTGCTGGTAATAAGCCAGTATGCGGTCGCGGTAGTT
ACCTTCGCCGGATTGCAGCAACTCAGTCAGTCGCTGGTGATATGCGGCGTAATGACGCTC
AAGCATGGCAACGCCAAACGCTTCTTTAGAGCGAAAGTAGTGATAGAAGGACCCTTTCGG
CACTTCAGCGGTTTTTAGTAATTCGCTTAGCCCCATCCCGGTGAATCCACGTTGCAGGCA
AAGTTGCTCGCCCGTCGCCAGGAGATGTTCGCGAGTATCATGTTCGGTGTGTTTGTTCAT
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| AT6245 | Mycobacterium tuberculosis H37Rv |
24.444 |
33.251 |
0.165 |
| AT6245 | Mycobacterium tuberculosis H37Rv |
34.615 |
12.808 |
0.09 |