TAfinder detailed results

Overview

Job ID 9mizKMmBqU
Sequence name Escherichia coli strain DH5alpha chromosome, complete genome.
Predicted type I

Toxin (Protein)


Predicted family ldrD (T6328) Predicted domain Ldr_toxin (Ldr)
Locus tag C1467_RS24935 Length 35 a.a.
Coordinates 211547..211654 (+)

Antitoxin (RNA)


Predicted family rdlD (AT6344) Predicted domain -
Locus tag NuclAT_24 Length 59 bp
Coordinates 211432..211490 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
C1467_RS01055 206820..207803 + 984 WP_001196496.1 dipeptide ABC transporter ATP-binding protein -
C1467_RS01060 207800..208804 + 1005 WP_000107031.1 dipeptide ABC transporter ATP-binding subunit DppF -
C1467_RS01065 208834..210105 - 1272 WP_001296805.1 aromatic amino acid transport family protein -
C1467_RS01080 210581..210688 + 108 WP_001295224.1 type I toxin-antitoxin system toxin Ldr family protein -
C1467_RS24930 211064..211171 + 108 WP_001295224.1 type I toxin-antitoxin system toxin Ldr family protein -
- 211432..211490 - 180 - - Antitoxin
C1467_RS24935 211547..211654 + 108 WP_001295224.1 type I toxin-antitoxin system toxin Ldr family protein Toxin
C1467_RS01105 211741..213420 - 1680 WP_000191596.1 cellulose biosynthesis protein BcsG -
C1467_RS01110 213417..213608 - 192 WP_000988308.1 cellulose biosynthesis protein BcsF -
C1467_RS01115 213605..215176 - 1572 WP_001204931.1 cellulose biosynthesis c-di-GMP-binding protein BcsE -
C1467_RS01120 215449..215637 + 189 WP_001063318.1 cellulose biosynthesis protein BcsR -
C1467_RS01125 215649..216401 + 753 WP_000279530.1 cellulose biosynthesis protein BcsQ -

Domains

The domains were predicted by HMMER and were sorted by score.

Toxin

Ldr_toxin (Ldr) (E-value: 2.1e-27, Score:93)

(1-35)

Ldr_toxin (Ldr) (E-value: 2.1e-27, Score:93)

(1-35)

Ldr_toxin (Ldr) (E-value: 2.1e-27, Score:93)

(1-35)


Sequences

Toxin        


Download         Length: 35 a.a.        Molecular weight: 3882.70 Da        Isoelectric Point: 9.0157

>WP_001295224.1 TA_4 Toxin
MTLAELGMAFWHDLAAPVIAGILASMIVNWLNKRK*

Download         Length: 108 bp

>WP_001295224.1 TA_4 Toxin
ATGACGCTCGCAGAACTGGGCATGGCCTTCTGGCATGATTTAGCGGCTCCGGTCATTGCT
GGCATTCTTGCCAGTATGATCGTGAACTGGCTGAACAAGCGGAAGTAA

Antitoxin


Download         Length: 59 bp

>NuclAT_24 TA_4 Antitoxin
GAGAAAACCCCCGCACGTTGCAGGTATGCACCTGACAACATCACGGGGGCCATTCTTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
T6328 Escherichia coli str. K-12 substr. MC4100

97.143

100

0.944
T6348 Escherichia coli K-12 strain ER3413

97.143

100

0.944
T6340 Escherichia coli str. K-12 substr. MDS42

97.143

100

0.944
T6336 Escherichia coli str. K-12 substr. DH10B

97.143

100

0.944
T6344 Escherichia coli str. K-12 substr. W3110

97.143

100

0.944
T6332 Escherichia coli str. K-12 substr. MG1655

97.143

100

0.944
T6326 Escherichia coli str. K-12 substr. MC4100

60

100

0.583
T6346 Escherichia coli K-12 strain ER3413

60

100

0.583
T6338 Escherichia coli str. K-12 substr. MDS42

60

100

0.583
T6334 Escherichia coli str. K-12 substr. DH10B

60

100

0.583
T6342 Escherichia coli str. K-12 substr. W3110

60

100

0.583
T6330 Escherichia coli str. K-12 substr. MG1655

60

100

0.583
T6327 Escherichia coli str. K-12 substr. MC4100

60

100

0.583
T6325 Escherichia coli str. K-12 substr. MC4100

60

100

0.583
T6347 Escherichia coli K-12 strain ER3413

60

100

0.583
T6345 Escherichia coli K-12 strain ER3413

60

100

0.583
T6339 Escherichia coli str. K-12 substr. MDS42

60

100

0.583
T6337 Escherichia coli str. K-12 substr. MDS42

60

100

0.583
T6335 Escherichia coli str. K-12 substr. DH10B

60

100

0.583
T6333 Escherichia coli str. K-12 substr. DH10B

60

100

0.583
T6343 Escherichia coli str. K-12 substr. W3110

60

100

0.583
T6341 Escherichia coli str. K-12 substr. W3110

60

100

0.583
T6331 Escherichia coli str. K-12 substr. MG1655

60

100

0.583
T6329 Escherichia coli str. K-12 substr. MG1655

60

100

0.583
T6328 Escherichia coli str. K-12 substr. MC4100

97.143

100

0.944
T6348 Escherichia coli K-12 strain ER3413

97.143

100

0.944
T6340 Escherichia coli str. K-12 substr. MDS42

97.143

100

0.944
T6336 Escherichia coli str. K-12 substr. DH10B

97.143

100

0.944
T6344 Escherichia coli str. K-12 substr. W3110

97.143

100

0.944
T6332 Escherichia coli str. K-12 substr. MG1655

97.143

100

0.944
T6326 Escherichia coli str. K-12 substr. MC4100

60

100

0.583
T6346 Escherichia coli K-12 strain ER3413

60

100

0.583
T6338 Escherichia coli str. K-12 substr. MDS42

60

100

0.583
T6334 Escherichia coli str. K-12 substr. DH10B

60

100

0.583
T6342 Escherichia coli str. K-12 substr. W3110

60

100

0.583
T6330 Escherichia coli str. K-12 substr. MG1655

60

100

0.583
T6327 Escherichia coli str. K-12 substr. MC4100

60

100

0.583
T6325 Escherichia coli str. K-12 substr. MC4100

60

100

0.583
T6347 Escherichia coli K-12 strain ER3413

60

100

0.583
T6345 Escherichia coli K-12 strain ER3413

60

100

0.583
T6339 Escherichia coli str. K-12 substr. MDS42

60

100

0.583
T6337 Escherichia coli str. K-12 substr. MDS42

60

100

0.583
T6335 Escherichia coli str. K-12 substr. DH10B

60

100

0.583
T6333 Escherichia coli str. K-12 substr. DH10B

60

100

0.583
T6343 Escherichia coli str. K-12 substr. W3110

60

100

0.583
T6341 Escherichia coli str. K-12 substr. W3110

60

100

0.583
T6331 Escherichia coli str. K-12 substr. MG1655

60

100

0.583
T6329 Escherichia coli str. K-12 substr. MG1655

60

100

0.583
T6328 Escherichia coli str. K-12 substr. MC4100

97.143

100

0.944
T6348 Escherichia coli K-12 strain ER3413

97.143

100

0.944
T6340 Escherichia coli str. K-12 substr. MDS42

97.143

100

0.944
T6336 Escherichia coli str. K-12 substr. DH10B

97.143

100

0.944
T6344 Escherichia coli str. K-12 substr. W3110

97.143

100

0.944
T6332 Escherichia coli str. K-12 substr. MG1655

97.143

100

0.944
T6326 Escherichia coli str. K-12 substr. MC4100

60

100

0.583
T6346 Escherichia coli K-12 strain ER3413

60

100

0.583
T6338 Escherichia coli str. K-12 substr. MDS42

60

100

0.583
T6334 Escherichia coli str. K-12 substr. DH10B

60

100

0.583
T6342 Escherichia coli str. K-12 substr. W3110

60

100

0.583
T6330 Escherichia coli str. K-12 substr. MG1655

60

100

0.583
T6327 Escherichia coli str. K-12 substr. MC4100

60

100

0.583
T6325 Escherichia coli str. K-12 substr. MC4100

60

100

0.583
T6347 Escherichia coli K-12 strain ER3413

60

100

0.583
T6345 Escherichia coli K-12 strain ER3413

60

100

0.583
T6339 Escherichia coli str. K-12 substr. MDS42

60

100

0.583
T6337 Escherichia coli str. K-12 substr. MDS42

60

100

0.583
T6335 Escherichia coli str. K-12 substr. DH10B

60

100

0.583
T6333 Escherichia coli str. K-12 substr. DH10B

60

100

0.583
T6343 Escherichia coli str. K-12 substr. W3110

60

100

0.583
T6341 Escherichia coli str. K-12 substr. W3110

60

100

0.583
T6331 Escherichia coli str. K-12 substr. MG1655

60

100

0.583
T6329 Escherichia coli str. K-12 substr. MG1655

60

100

0.583
Protein Organism Identities (%) Coverage (%) Ha-value