TAfinder detailed results

Overview

Job ID 9mizKMmBqU
Sequence name Escherichia coli strain DH5alpha chromosome, complete genome.
Predicted type II

Orphan Antitoxin (Protein)


Predicted family phd (AT10093) Predicted domain PF00392 (GntR)
Locus tag C1467_RS09005 Length 248 a.a.
Coordinates 1746346..1747092 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
C1467_RS08955 1741829..1742167 - 339 WP_000153067.1 Ni(II)/Co(II) efflux transporter accessory subunit RcnB -
C1467_RS08960 1742386..1743210 - 825 WP_000134569.1 nickel/cobalt efflux protein RcnA -
C1467_RS08965 1743331..1743603 + 273 WP_000019944.1 Ni(II)/Co(II)-binding transcriptional repressor RcnR -
C1467_RS08970 1743826..1744614 + 789 WP_001195605.1 hydroxyethylthiazole kinase -
C1467_RS08975 1744611..1745411 + 801 WP_000822274.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
C1467_RS08980 1745476..1746294 + 819 WP_001297420.1 glycoside hydrolase family 25 protein -
C1467_RS08985 1746346..1747092 + 747 WP_000434038.1 GntR family transcriptional regulator Antitoxin
C1467_RS08990 1747066..1748031 - 966 WP_000011957.1 carbohydrate kinase family protein -
C1467_RS08995 1748028..1749032 - 1005 WP_000846224.1 ADP-ribosylglycohydrolase family protein -
C1467_RS09000 1749029..1750306 - 1278 WP_000858498.1 nucleoside permease -
C1467_RS09005 1750563..1751615 + 1053 WP_000129551.1 class I fructose-bisphosphate aldolase -

Domains

The domains were predicted by HMMER and were sorted by score.

Orphan Antitoxin


No domain identified.



Sequences

Orphan Antitoxin        


Download         Length:         Molecular weight: 28277.21 Da        Isoelectric Point: 6.6083

>WP_000434038.1 Orphan_TA_38 Antitoxin
MEQAHTQLIAQLNERILAADNTPLYIKFAETVKNAVRSGVLEHGNILPGERDLSQLTGVS
RITVRKAMQALEEEGVVTRSRGYGTQINNIFEYSLKEARGFSQQVVLRGKKPDTLWVNKR
VVKCPEEVAQQLAVEAGSDVFLLKRIRYVDEEAVSIEESWVPAHLIHDVDAIGISLYDYF
RSQHIYPQRTRSRVSARMPDAEFQSHIQLDSKIPVLVIKQVALDQQQRPIEYSISHCRSD
LYVFVCEE*

Download         Length: 747 bp

>WP_000434038.1 Orphan_TA_38 Antitoxin
ATGGAACAAGCGCATACCCAGCTGATTGCCCAACTGAACGAGCGTATTTTAGCGGCGGAT
AACACGCCGCTTTATATTAAGTTTGCCGAAACGGTAAAAAATGCCGTGCGCAGCGGGGTG
CTGGAGCATGGCAATATTTTGCCCGGTGAGCGTGATTTAAGTCAGTTAACCGGCGTTTCG
CGCATTACGGTGCGCAAGGCGATGCAGGCGCTGGAAGAAGAGGGTGTGGTGACGCGTTCG
CGCGGTTACGGCACGCAGATCAACAACATCTTCGAATACTCGTTGAAAGAAGCGCGAGGT
TTTTCTCAGCAGGTGGTATTGCGCGGGAAAAAGCCCGATACGCTATGGGTTAACAAGCGT
GTCGTGAAATGTCCCGAAGAAGTCGCGCAGCAGCTGGCGGTCGAAGCAGGAAGTGATGTC
TTTTTGCTTAAGCGTATTCGCTATGTCGATGAAGAAGCGGTATCGATTGAGGAATCGTGG
GTTCCGGCGCATTTAATTCATGATGTTGATGCCATCGGGATTTCACTTTATGACTATTTC
CGCAGCCAGCACATTTACCCACAACGTACGCGTTCCCGCGTTAGCGCCCGGATGCCGGAT
GCCGAGTTTCAGTCACATATTCAGTTAGATAGCAAAATACCGGTGCTGGTGATCAAGCAA
GTGGCGCTTGACCAACAGCAACGGCCTATTGAGTACAGCATTAGCCACTGTCGCAGCGAT
CTATACGTTTTTGTGTGCGAGGAGTAG

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
AT10093 Burkholderia pseudomallei K96243

30.435

32.394

0.112