TAfinder detailed results

Overview

Job ID 9mizKMmBqU
Sequence name Escherichia coli strain DH5alpha chromosome, complete genome.
Predicted type II

Orphan Antitoxin (Protein)


Predicted family TsdA (AT10117) Predicted domain -
Locus tag C1467_RS08990 Length 90 a.a.
Coordinates 1743331..1743603 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
C1467_RS08950 1740713..1741747 + 1035 WP_000405707.1 putative fimbrial-like adhesin protein -
C1467_RS08955 1741829..1742167 - 339 WP_000153067.1 Ni(II)/Co(II) efflux transporter accessory subunit RcnB -
C1467_RS08960 1742386..1743210 - 825 WP_000134569.1 nickel/cobalt efflux protein RcnA -
C1467_RS08965 1743331..1743603 + 273 WP_000019944.1 Ni(II)/Co(II)-binding transcriptional repressor RcnR Antitoxin
C1467_RS08970 1743826..1744614 + 789 WP_001195605.1 hydroxyethylthiazole kinase -
C1467_RS08975 1744611..1745411 + 801 WP_000822274.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
C1467_RS08980 1745476..1746294 + 819 WP_001297420.1 glycoside hydrolase family 25 protein -
C1467_RS08985 1746346..1747092 + 747 WP_000434038.1 GntR family transcriptional regulator -
C1467_RS08990 1747066..1748031 - 966 WP_000011957.1 carbohydrate kinase family protein -

Domains

The domains were predicted by HMMER and were sorted by score.

Orphan Antitoxin


No domain identified.



Sequences

Orphan Antitoxin        


Download         Length:         Molecular weight: 10133.87 Da        Isoelectric Point: 9.0529

>WP_000019944.1 Orphan_TA_37 Antitoxin
MSHTIRDKQKLKARASKIQGQVVALKKMLDEPHECAAVLQQIAAIRGAVNGLMREVIKGH
LTEHIVHQGDELKREEDLDVVLKVLDSYIK*

Download         Length: 273 bp

>WP_000019944.1 Orphan_TA_37 Antitoxin
ATGTCTCATACAATCCGTGATAAACAGAAACTGAAAGCGCGTGCCAGTAAGATTCAGGGC
CAGGTCGTGGCGCTCAAGAAAATGCTCGACGAGCCGCACGAATGCGCTGCAGTTTTACAA
CAGATTGCTGCTATCCGTGGCGCGGTAAACGGTCTGATGCGGGAAGTGATTAAAGGTCAT
CTGACGGAACACATCGTTCACCAGGGGGATGAGCTAAAACGTGAAGAAGATCTGGATGTC
GTTCTGAAGGTGCTGGATTCATATATCAAATAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
AT10117 Staphylococcus aureus subsp. aureus N315

31.818

90.722

0.308